Plasmid CP056804.1

Sequence

Nucleotide Information

Accession CP056804.1
Description Escherichia coli strain RHBSTW-00176 plasmid pRHBSTW-00176_5, complete sequence
Source insd
Topology circular
Length 5210 bp
GC Content 0.49 %
Created at NCBI July 28, 2020



Assembly

Genome Data Information

Accession GCA_013790245.1
Assembly Coverage 49.6755


Biosample

Curated Collection Information
Accession 15148525

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Freshwater sample from upstream of wastewater treatment plant
Classification aquatic,cell_culture,freshwater
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP035723.1 See Comparison
NZ_CP035472.1 See Comparison
NZ_CP035519.1 See Comparison
NZ_CP035480.1 See Comparison
NC_002809.1 See Comparison
NZ_CP139799.1 See Comparison
CP134928.1 See Comparison
NZ_CP054348.1 See Comparison
NZ_CP035723.1 See Comparison
NZ_AP022046.1 See Comparison
NZ_CP095503.1 See Comparison
NZ_LR898880.1 See Comparison
NZ_CP035472.1 See Comparison
NZ_CP139799.1 See Comparison
NZ_CP035519.1 See Comparison
NZ_CP035480.1 See Comparison
CP134928.1 See Comparison
NC_002809.1 See Comparison
NZ_CP054348.1 See Comparison
NZ_CP095503.1 See Comparison
NZ_AP022046.1 See Comparison
NZ_LR898880.1 See Comparison
NC_002809.1 See Comparison
NZ_CP035519.1 See Comparison
NZ_CP035480.1 See Comparison
NZ_CP035723.1 See Comparison
NZ_CP035472.1 See Comparison
CP134928.1 See Comparison
CP056804.1 See Comparison
NZ_CP139799.1 See Comparison
NC_002809.1 See Comparison
NZ_CP035723.1 See Comparison
NZ_CP035472.1 See Comparison
NZ_CP035519.1 See Comparison
NZ_CP035480.1 See Comparison
NZ_CP054348.1 See Comparison
NZ_LR898880.1 See Comparison
NZ_AP022046.1 See Comparison
NZ_CP095503.1 See Comparison
NZ_CP054348.1 See Comparison
CP134928.1 See Comparison
NZ_CP139799.1 See Comparison
NZ_LR898880.1 See Comparison
NZ_CP139799.1 See Comparison
NZ_LR898880.1 See Comparison
NZ_AP022046.1 See Comparison
NZ_CP095503.1 See Comparison
NZ_CP035723.1 See Comparison
NZ_CP035472.1 See Comparison
NZ_CP035519.1 See Comparison
NZ_CP035480.1 See Comparison
NC_002809.1 See Comparison
CP134928.1 See Comparison
NZ_CP054348.1 See Comparison
NZ_AP022046.1 See Comparison
NZ_CP095503.1 See Comparison
NZ_CP035723.1 See Comparison
NZ_CP035472.1 See Comparison
NZ_CP035519.1 See Comparison
NZ_CP035480.1 See Comparison
NZ_CP139799.1 See Comparison
NZ_LR898880.1 See Comparison
NC_002809.1 See Comparison
CP134928.1 See Comparison
NZ_CP054348.1 See Comparison
NZ_AP022046.1 See Comparison
NZ_CP095503.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore