Plasmid NZ_CP034049.1

Sequence

Nucleotide Information

Accession NZ_CP034049.1
Description Klebsiella pneumoniae strain KP_NORM_BLD_2014_104014 plasmid unnamed4, complete sequence
Source refseq
Topology circular
Length 54880 bp
GC Content 0.53 %
Created at NCBI Dec. 4, 2018



Assembly

Genome Data Information

Accession GCF_003855315.1
Assembly Coverage 250


Biosample

Curated Collection Information
Accession 10400778

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Norway
Original Query Type name
Coordinates (Lat/Lon) 64.57/11.53
Address Norway

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGhypothetical proteincopy
PGAGC40 family peptidasecopy
PGAGphage minor tail protein Lcopy
PGAGphage tail proteincopy
PGAGphage tail tape measure proteincopy
PGAGphage tail proteincopy
PGAGmajor tail shaft subunitcopy
PGAGHK97-gp10 family putative phage morphogenesis proteincopy
PGAGhypothetical proteincopy
PGAGhead-tail adaptor proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 56 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000232__CP012429rep_cluster_12619227691plus99.33310002715
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
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Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2