Plasmid NZ_CP034048.1

Sequence

Nucleotide Information

Accession NZ_CP034048.1
Description Klebsiella pneumoniae strain KP_NORM_BLD_2014_104014 plasmid unnamed3, complete sequence
Source refseq
Topology circular
Length 76757 bp
GC Content 0.52 %
Created at NCBI Dec. 4, 2018



Assembly

Genome Data Information

Accession GCF_003855315.1
Assembly Coverage 250


Biosample

Curated Collection Information
Accession 10400778

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Norway
Original Query Type name
Coordinates (Lat/Lon) 64.57/11.53
Address Norway

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP034048.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusaac(6')-Ib-cr5copy
amrfinderplusblaTEM-1copy
amrfinderplusblaOXA-1copy
rgiAAC(6')-Ib-cr6copy
PGAGrepAcopy
PGAGCPBP family intramembrane glutamic endopeptidasecopy
PGAGpemIcopy
PGAGpemKcopy
PGAGTn3-like element Tn5403 family transposasecopy
PGAGIS6-like element IS26 family transposasecopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 101 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTAP014804MOBP89979546plus10010001016
repliconMK878891_00042IncFIA31858plus99.5179701507
repliconAY458016IncFIC7650076757minus100992.94e-132477
relaxaseNC_017627_00068MOBF6665371920plus97.09610003343
mate-pair-formationNC_022651_00077MPF_F1155311861plus99.029994.79e-63212
mate-pair-formationNC_010409_00124MPF_F1243913164plus97.9341006.52e-155483
mate-pair-formationNC_019094_00090MPF_F1316714576plus96.815970857
mate-pair-formationNC_017639_00094MPF_F1547815990plus98.2461005.42e-98316
mate-pair-formationNC_013437_00116MPF_T1762618855plus87.317990766
mate-pair-formationNC_013437_00116MPF_T4877250181plus93.83990887
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 16 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2