Plasmid NZ_CP032792.1

Sequence

Nucleotide Information

Accession NZ_CP032792.1
Description Escherichia coli strain NZRM4165 plasmid pNZRM4165, complete sequence
Source refseq
Topology circular
Length 90310 bp
GC Content 0.48 %
Created at NCBI Oct. 13, 2019



Assembly

Genome Data Information

Accession GCF_008926085.1
Assembly Coverage 186


Biosample

Curated Collection Information
Accession 10177968

PLASMID INFORMATION
BIOSAMPLE_pathotype Escherichia coli -STEC

GEOGRAPHICAL INFORMATION
Original Query New Zealand
Original Query Type name
Coordinates (Lat/Lon) -41.50/172.83
Address New Zealand

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

CP073592.1 See Comparison
CP073594.1 See Comparison
CP073596.1 See Comparison
CP073598.1 See Comparison
CP073600.1 See Comparison
CP073602.1 See Comparison
CP073605.1 See Comparison
CP073608.1 See Comparison
CP073610.1 See Comparison
CP073615.1 See Comparison
CP073618.1 See Comparison
CP073620.1 See Comparison
NZ_CP018248.1 See Comparison
NZ_CP032809.1 See Comparison
NZ_CP032804.1 See Comparison
NZ_CP032790.1 See Comparison
NZ_CP062701.1 See Comparison
NZ_CP038301.1 See Comparison
NZ_CP038293.1 See Comparison
NZ_CP038424.1 See Comparison
NZ_CP062779.1 See Comparison
NZ_CP038301.1 See Comparison
CP073592.1 See Comparison
CP073594.1 See Comparison
CP073596.1 See Comparison
CP073598.1 See Comparison
CP073600.1 See Comparison
CP073602.1 See Comparison
CP073605.1 See Comparison
CP073608.1 See Comparison
CP073610.1 See Comparison
CP073615.1 See Comparison
CP073618.1 See Comparison
CP073620.1 See Comparison
NZ_CP018248.1 See Comparison
NZ_CP032809.1 See Comparison
NZ_CP032804.1 See Comparison
NZ_CP032790.1 See Comparison
NZ_CP038293.1 See Comparison
NZ_CP038293.1 See Comparison
NZ_CP038424.1 See Comparison
NZ_CP018248.1 See Comparison
NZ_CP038301.1 See Comparison
NZ_CP062701.1 See Comparison
NZ_CP062779.1 See Comparison
CP073592.1 See Comparison
CP073594.1 See Comparison
CP073596.1 See Comparison
CP073598.1 See Comparison
CP073600.1 See Comparison
CP073602.1 See Comparison
CP073605.1 See Comparison
CP073608.1 See Comparison
CP073610.1 See Comparison
CP073615.1 See Comparison
CP073618.1 See Comparison
CP073620.1 See Comparison
NZ_CP032809.1 See Comparison
NZ_CP032804.1 See Comparison
NZ_CP032790.1 See Comparison
NZ_CP038424.1 See Comparison
NZ_CP062701.1 See Comparison
NZ_CP062779.1 See Comparison
CP073596.1 See Comparison
CP073598.1 See Comparison
CP073600.1 See Comparison
CP073602.1 See Comparison
CP073605.1 See Comparison
CP073608.1 See Comparison
CP073610.1 See Comparison
CP073615.1 See Comparison
CP073618.1 See Comparison
CP073620.1 See Comparison
NZ_CP032809.1 See Comparison
CP073592.1 See Comparison
CP073594.1 See Comparison
NZ_CP018248.1 See Comparison
NZ_CP032804.1 See Comparison
NZ_CP032790.1 See Comparison
NZ_CP038301.1 See Comparison
CP073600.1 See Comparison
NZ_CP038293.1 See Comparison
NZ_CP038424.1 See Comparison
NZ_CP062701.1 See Comparison
NZ_CP062779.1 See Comparison
CP073602.1 See Comparison
CP073605.1 See Comparison
CP073608.1 See Comparison
CP073610.1 See Comparison
CP073615.1 See Comparison
CP073618.1 See Comparison
CP073620.1 See Comparison
NZ_CP032809.1 See Comparison
CP073592.1 See Comparison
CP073594.1 See Comparison
CP073596.1 See Comparison
CP073598.1 See Comparison
NZ_CP018248.1 See Comparison
NZ_CP032804.1 See Comparison
NZ_CP032790.1 See Comparison
NZ_CP038301.1 See Comparison
NZ_CP062701.1 See Comparison
NZ_CP062779.1 See Comparison
CP073592.1 See Comparison
CP073594.1 See Comparison
CP073596.1 See Comparison
CP073598.1 See Comparison
CP073600.1 See Comparison
CP073602.1 See Comparison
CP073605.1 See Comparison
CP073608.1 See Comparison
CP073610.1 See Comparison
CP073615.1 See Comparison
CP073618.1 See Comparison
CP073620.1 See Comparison
NZ_CP032804.1 See Comparison
NZ_CP032790.1 See Comparison
NZ_CP038293.1 See Comparison
NZ_CP038424.1 See Comparison
NZ_CP062701.1 See Comparison
NZ_CP062779.1 See Comparison
NZ_CP038293.1 See Comparison
NZ_CP038424.1 See Comparison
NZ_CP018248.1 See Comparison
NZ_CP032792.1 See Comparison
NZ_CP032809.1 See Comparison
NZ_CP038301.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore