Plasmid NZ_CP031724.1

Sequence

Nucleotide Information

Accession NZ_CP031724.1
Description Enterobacter hormaechei strain WCHEH020038 plasmid pCTXM9_020038, complete sequence
Source refseq
Topology circular
Length 296580 bp
GC Content 0.47 %
Created at NCBI Sept. 2, 2018



Assembly

Genome Data Information

Accession GCF_003428425.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 8027258

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Sichuan,Chengdu
Original Query Type name
Coordinates (Lat/Lon) 30.68/104.06
Address China,Sichuan,Chengdu

ECOSYSTEM
Original Query Homo sapiens,Pure Culture
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP053645.1 See Comparison
CP052871.1 See Comparison
OW967211.1 See Comparison
OW849303.1 See Comparison
OW849134.1 See Comparison
NZ_CP083854.1 See Comparison
NZ_CP083850.1 See Comparison
NZ_CP091320.1 See Comparison
NZ_CP091482.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_CP059712.1 See Comparison
CP061512.1 See Comparison
OW967211.1 See Comparison
NZ_CP053645.1 See Comparison
OW849303.1 See Comparison
OW849134.1 See Comparison
NZ_CP083854.1 See Comparison
NZ_CP083850.1 See Comparison
CP052871.1 See Comparison
NZ_CP091320.1 See Comparison
NZ_CP091482.1 See Comparison
NZ_AP022511.1 See Comparison
OW849303.1 See Comparison
NZ_CP053645.1 See Comparison
CP061512.1 See Comparison
NZ_CP059712.1 See Comparison
OW967211.1 See Comparison
NZ_CP083854.1 See Comparison
OW849134.1 See Comparison
NZ_CP083850.1 See Comparison
CP061512.1 See Comparison
NZ_CP091320.1 See Comparison
NZ_CP091482.1 See Comparison
CP052871.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_CP059712.1 See Comparison
OW967211.1 See Comparison
NZ_CP053645.1 See Comparison
CP052871.1 See Comparison
OW849303.1 See Comparison
OW849134.1 See Comparison
NZ_CP083854.1 See Comparison
NZ_CP083850.1 See Comparison
NZ_CP091320.1 See Comparison
NZ_CP091482.1 See Comparison
CP061512.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_CP059712.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_CP053645.1 See Comparison
OW967211.1 See Comparison
OW849303.1 See Comparison
OW849134.1 See Comparison
NZ_CP083854.1 See Comparison
NZ_CP083850.1 See Comparison
NZ_CP091320.1 See Comparison
NZ_CP091482.1 See Comparison
CP052871.1 See Comparison
NZ_CP059712.1 See Comparison
CP061512.1 See Comparison
OW849134.1 See Comparison
NZ_CP053645.1 See Comparison
OW967211.1 See Comparison
OW849303.1 See Comparison
NZ_CP091320.1 See Comparison
NZ_CP083854.1 See Comparison
NZ_CP083850.1 See Comparison
NZ_CP091482.1 See Comparison
NZ_AP022511.1 See Comparison
CP052871.1 See Comparison
CP061512.1 See Comparison
NZ_CP053645.1 See Comparison
NZ_CP059712.1 See Comparison
NZ_CP031724.1 See Comparison
OW849303.1 See Comparison
OW849134.1 See Comparison
NZ_CP083854.1 See Comparison
NZ_CP083850.1 See Comparison
OW967211.1 See Comparison
NZ_CP091320.1 See Comparison
NZ_CP091482.1 See Comparison
NZ_CP059712.1 See Comparison
CP052871.1 See Comparison
CP061512.1 See Comparison
NZ_AP022511.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaCTX-M-9copy
amrfinderplusaac(6')-Ib3copy
amrfinderplusaadA2copy
amrfinderplusaadA2copy
amrfinderplusant(2'')-Iacopy
amrfinderpluscatA1copy
amrfinderplusdfrA16copy
amrfinderplusblaSHV-12copy
rgiaadA2copy
rgiaadA3copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 324 entries
…



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
Loading...
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTNC_017500MOBH214154214744plus10010001092
repliconBX664015IncHI2A211840plus10010001164
replicon000340__KU353730rep_cluster_10885695857920plus98.54610001701
relaxaseNC_012555_00231MOBH218048221191plus10010002135
mate-pair-formationNC_005211_00005MPF_F27583543plus1001002.33e-172533
mate-pair-formationNC_009838_00006MPF_F35464814plus99.5271000800
mate-pair-formationNC_005211_00012MPF_T895511633plus10010001873
mate-pair-formationNC_021845_00017MPF_F3062232130plus99.6021000997
mate-pair-formationNC_005211_00030MPF_F3227233330plus1001000737
mate-pair-formationNC_005211_00200MPF_F211705213117minus1001000933
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 11 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2