Plasmid CP061512.1

Sequence

Nucleotide Information

Accession CP061512.1
Description Mixta calida strain 5098PV plasmid p5098PV-IncHI2, complete sequence
Source insd
Topology circular
Length 298499 bp
GC Content 0.47 %
Created at NCBI Sept. 22, 2020



Biosample

Curated Collection Information
Accession 16124464

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 45.200536N;9.147254E
Original Query Type coordinates
Coordinates (Lat/Lon) 45.20/9.15
Address Fondazione I.R.C.C.S. Policlinico San Matteo, Piazzale Camillo Golgi, Ponte di Pietra, Pavia, Lombardy, 27100, Italy

ECOSYSTEM
Original Query Homo sapiens,Rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 0
Host-associated Sex male

DISEASE
Original Query Pantoea calida
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP059712.1 See Comparison
NZ_OW849209.1 See Comparison
NZ_CP053645.1 See Comparison
OW849134.1 See Comparison
NZ_CP083854.1 See Comparison
NZ_CP083850.1 See Comparison
NZ_CP091482.1 See Comparison
CP052871.1 See Comparison
NZ_CP031724.1 See Comparison
NZ_KP975077.1 See Comparison
NZ_OW849209.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_CP059712.1 See Comparison
NZ_CP053645.1 See Comparison
NZ_CP083854.1 See Comparison
OW849134.1 See Comparison
NZ_CP083850.1 See Comparison
NZ_KP975077.1 See Comparison
NZ_CP031724.1 See Comparison
NZ_CP091482.1 See Comparison
NZ_AP022511.1 See Comparison
CP052871.1 See Comparison
NZ_CP059712.1 See Comparison
CP052871.1 See Comparison
OW849134.1 See Comparison
NZ_CP031724.1 See Comparison
NZ_OW849209.1 See Comparison
NZ_CP053645.1 See Comparison
NZ_CP083854.1 See Comparison
NZ_CP083850.1 See Comparison
NZ_CP091482.1 See Comparison
NZ_KP975077.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_OW849209.1 See Comparison
NZ_CP059712.1 See Comparison
NZ_CP053645.1 See Comparison
NZ_CP083854.1 See Comparison
OW849134.1 See Comparison
NZ_CP083850.1 See Comparison
NZ_CP031724.1 See Comparison
NZ_CP091482.1 See Comparison
NZ_KP975077.1 See Comparison
CP061512.1 See Comparison
CP052871.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_OW849209.1 See Comparison
NZ_CP059712.1 See Comparison
NZ_CP053645.1 See Comparison
NZ_CP083854.1 See Comparison
OW849134.1 See Comparison
NZ_CP083850.1 See Comparison
NZ_CP031724.1 See Comparison
NZ_CP091482.1 See Comparison
NZ_KP975077.1 See Comparison
CP052871.1 See Comparison
NZ_CP053645.1 See Comparison
NZ_AP022511.1 See Comparison
NZ_CP059712.1 See Comparison
NZ_KP975077.1 See Comparison
NZ_OW849209.1 See Comparison
OW849134.1 See Comparison
NZ_CP083854.1 See Comparison
NZ_CP083850.1 See Comparison
NZ_CP091482.1 See Comparison
NZ_CP031724.1 See Comparison
CP052871.1 See Comparison
NZ_AP022511.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore