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v. 2024_05_31_v2
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Antimicrobial Resistance Genes
Typing
Plasmid NZ_CP031348.1
Sequence
Nucleotide Information
Accession
NZ_CP031348.1
Description
Escherichia coli O145 strain RM9467-C1 plasmid pRM9467-C1, complete sequence
Source
refseq
Topology
circular
Length
89518 bp
GC Content
0.48 %
Created at NCBI
Sept. 18, 2020
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (1055538)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_014623245.1
Assembly Coverage
75.87
Biosample
Curated Collection Information
Accession
9742412
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
USA,CA
Original Query Type
name
Coordinates (Lat/Lon)
36.70/-118.76
Address
USA,CA
ECOSYSTEM
Original Query
Cattle,whole organism,feces
Classification
fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Bos taurus (
9913
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
Collapse all
Expand all
Similar Plasmids
based on Mash distance
NZ_CP031340.1
See Comparison
NZ_CP031344.1
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NZ_CP031348.1
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NZ_CP035771.1
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NZ_CP031346.1
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NZ_CP035773.1
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NZ_CP024660.1
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NZ_CP031342.1
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NZ_CP031354.1
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AP019707.1
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NZ_CP101295.1
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NZ_CP101311.1
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CP060104.1
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AP019704.1
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NZ_CP027578.1
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NZ_CP037944.1
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NZ_CP037946.1
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NZ_CP028380.1
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NZ_CP028113.1
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NZ_CP028115.1
See Comparison
NZ_CP027444.1
See Comparison
NZ_CP027556.1
See Comparison
NZ_CP027583.1
See Comparison
NZ_CP031340.1
See Comparison
NZ_AP024925.1
See Comparison
NZ_AP024922.1
See Comparison
NZ_AP027164.1
See Comparison
NZ_AP027167.1
See Comparison
NZ_AP027198.1
See Comparison
NZ_AP027161.1
See Comparison
NZ_AP027172.1
See Comparison
NZ_CP031344.1
See Comparison
NZ_CP035771.1
See Comparison
NZ_CP031346.1
See Comparison
NZ_CP035773.1
See Comparison
NZ_CP024660.1
See Comparison
NZ_CP031342.1
See Comparison
NZ_CP031354.1
See Comparison
AP019707.1
See Comparison
NZ_CP101295.1
See Comparison
NZ_CP101311.1
See Comparison
CP060104.1
See Comparison
AP019704.1
See Comparison
NZ_CP028113.1
See Comparison
NZ_CP037944.1
See Comparison
NZ_CP037946.1
See Comparison
NZ_CP028380.1
See Comparison
NZ_CP027578.1
See Comparison
NZ_CP027444.1
See Comparison
NZ_CP027556.1
See Comparison
NZ_CP027583.1
See Comparison
NZ_CP028115.1
See Comparison
NZ_AP024925.1
See Comparison
NZ_AP024922.1
See Comparison
NZ_CP037944.1
See Comparison
AP019707.1
See Comparison
AP019704.1
See Comparison
NZ_AP027164.1
See Comparison
NZ_AP027167.1
See Comparison
NZ_AP027198.1
See Comparison
NZ_AP027161.1
See Comparison
NZ_AP027172.1
See Comparison
NZ_CP031340.1
See Comparison
NZ_CP031344.1
See Comparison
NZ_CP035771.1
See Comparison
NZ_CP031346.1
See Comparison
NZ_CP035773.1
See Comparison
NZ_CP024660.1
See Comparison
NZ_CP031342.1
See Comparison
NZ_CP031354.1
See Comparison
NZ_CP101295.1
See Comparison
NZ_CP101311.1
See Comparison
CP060104.1
See Comparison
NZ_CP037946.1
See Comparison
NZ_CP028380.1
See Comparison
NZ_CP027578.1
See Comparison
NZ_CP028113.1
See Comparison
NZ_CP027444.1
See Comparison
NZ_CP027556.1
See Comparison
NZ_CP028115.1
See Comparison
NZ_CP027583.1
See Comparison
NZ_CP101295.1
See Comparison
NZ_AP024925.1
See Comparison
NZ_AP024922.1
See Comparison
NZ_AP027164.1
See Comparison
NZ_AP027167.1
See Comparison
NZ_AP027198.1
See Comparison
NZ_AP027161.1
See Comparison
NZ_AP027172.1
See Comparison
NZ_CP031340.1
See Comparison
NZ_CP031344.1
See Comparison
NZ_CP035771.1
See Comparison
NZ_CP031346.1
See Comparison
NZ_CP035773.1
See Comparison
NZ_CP024660.1
See Comparison
NZ_CP031342.1
See Comparison
NZ_CP031354.1
See Comparison
NZ_CP101311.1
See Comparison
AP019707.1
See Comparison
CP060104.1
See Comparison
AP019704.1
See Comparison
NZ_CP028113.1
See Comparison
NZ_CP037944.1
See Comparison
NZ_CP037946.1
See Comparison
NZ_CP028380.1
See Comparison
NZ_CP028115.1
See Comparison
NZ_CP101295.1
See Comparison
NZ_CP027578.1
See Comparison
NZ_CP027444.1
See Comparison
NZ_CP027556.1
See Comparison
NZ_CP027583.1
See Comparison
NZ_AP027164.1
See Comparison
NZ_AP027167.1
See Comparison
NZ_AP027198.1
See Comparison
NZ_AP027161.1
See Comparison
NZ_AP027172.1
See Comparison
NZ_AP024925.1
See Comparison
NZ_AP024922.1
See Comparison
NZ_CP031340.1
See Comparison
NZ_CP031344.1
See Comparison
NZ_CP035771.1
See Comparison
NZ_CP031346.1
See Comparison
NZ_CP035773.1
See Comparison
NZ_CP024660.1
See Comparison
NZ_CP031342.1
See Comparison
NZ_CP031354.1
See Comparison
NZ_CP101311.1
See Comparison
CP060104.1
See Comparison
NZ_CP028113.1
See Comparison
AP019707.1
See Comparison
AP019704.1
See Comparison
NZ_CP037944.1
See Comparison
NZ_CP037946.1
See Comparison
NZ_CP028380.1
See Comparison
NZ_CP028115.1
See Comparison
NZ_CP101295.1
See Comparison
NZ_CP027578.1
See Comparison
NZ_CP027444.1
See Comparison
NZ_CP027556.1
See Comparison
NZ_CP027583.1
See Comparison
NZ_AP024925.1
See Comparison
NZ_AP024922.1
See Comparison
NZ_AP027164.1
See Comparison
NZ_AP027167.1
See Comparison
NZ_AP027198.1
See Comparison
NZ_AP027161.1
See Comparison
NZ_AP027172.1
See Comparison
NZ_CP031340.1
See Comparison
NZ_CP031344.1
See Comparison
NZ_CP035771.1
See Comparison
NZ_CP031346.1
See Comparison
NZ_CP035773.1
See Comparison
NZ_CP024660.1
See Comparison
NZ_CP031342.1
See Comparison
NZ_CP031354.1
See Comparison
NZ_CP101311.1
See Comparison
NZ_CP027578.1
See Comparison
AP019707.1
See Comparison
AP019704.1
See Comparison
NZ_CP028380.1
See Comparison
NZ_CP028113.1
See Comparison
NZ_CP028115.1
See Comparison
CP060104.1
See Comparison
NZ_CP037944.1
See Comparison
NZ_CP037946.1
See Comparison
NZ_CP027444.1
See Comparison
NZ_CP027556.1
See Comparison
NZ_CP027583.1
See Comparison
NZ_AP027198.1
See Comparison
NZ_AP027161.1
See Comparison
NZ_AP027172.1
See Comparison
NZ_AP024925.1
See Comparison
NZ_AP024922.1
See Comparison
NZ_AP027164.1
See Comparison
NZ_AP027167.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore