Plasmid NZ_CP028380.1

Sequence

Nucleotide Information

Accession NZ_CP028380.1
Description Escherichia coli O145 str. RM9872 plasmid pRM9872-1, complete sequence
Source refseq
Topology circular
Length 89518 bp
GC Content 0.48 %
Created at NCBI Sept. 22, 2018



Assembly

Genome Data Information

Accession GCF_003586065.1
Assembly Coverage 287


Biosample

Curated Collection Information
Accession 8724661

PLASMID INFORMATION
BIOSAMPLE_pathotype STEC

GEOGRAPHICAL INFORMATION
Original Query 36.68N;121.67W
Original Query Type coordinates
Coordinates (Lat/Lon) 36.68/-121.67
Address 641, Kirkwood Avenue, Salinas, Monterey County, California, 93901, United States

ECOSYSTEM
Original Query Bos taurus,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

AP019707.1 See Comparison
AP019704.1 See Comparison
NZ_CP037944.1 See Comparison
NZ_CP037946.1 See Comparison
NZ_CP028113.1 See Comparison
NZ_CP028115.1 See Comparison
NZ_CP027578.1 See Comparison
NZ_CP027444.1 See Comparison
NZ_CP027556.1 See Comparison
NZ_CP027583.1 See Comparison
NZ_AP024925.1 See Comparison
NZ_AP024922.1 See Comparison
NZ_AP027164.1 See Comparison
NZ_AP027167.1 See Comparison
NZ_AP027198.1 See Comparison
NZ_AP027161.1 See Comparison
NZ_AP027172.1 See Comparison
NZ_CP031344.1 See Comparison
NZ_CP031348.1 See Comparison
NZ_CP035771.1 See Comparison
NZ_CP031346.1 See Comparison
NZ_CP035773.1 See Comparison
NZ_CP024660.1 See Comparison
NZ_CP031342.1 See Comparison
NZ_CP031354.1 See Comparison
NZ_CP101295.1 See Comparison
NZ_CP101311.1 See Comparison
AP019707.1 See Comparison
CP060104.1 See Comparison
AP019704.1 See Comparison
NZ_CP027578.1 See Comparison
NZ_CP037944.1 See Comparison
NZ_CP037946.1 See Comparison
NZ_CP028380.1 See Comparison
NZ_CP028113.1 See Comparison
NZ_CP027444.1 See Comparison
NZ_CP028115.1 See Comparison
NZ_CP027556.1 See Comparison
NZ_CP027583.1 See Comparison
NZ_CP101295.1 See Comparison
NZ_AP024925.1 See Comparison
NZ_AP024922.1 See Comparison
NZ_AP027164.1 See Comparison
NZ_AP027167.1 See Comparison
NZ_AP027198.1 See Comparison
NZ_AP027161.1 See Comparison
NZ_AP027172.1 See Comparison
NZ_CP031344.1 See Comparison
NZ_CP031348.1 See Comparison
NZ_CP035771.1 See Comparison
NZ_CP031346.1 See Comparison
NZ_CP035773.1 See Comparison
NZ_CP024660.1 See Comparison
NZ_CP031342.1 See Comparison
NZ_CP031354.1 See Comparison
NZ_CP101311.1 See Comparison
AP019707.1 See Comparison
CP060104.1 See Comparison
AP019704.1 See Comparison
NZ_CP037944.1 See Comparison
NZ_CP037946.1 See Comparison
NZ_CP028113.1 See Comparison
NZ_CP027578.1 See Comparison
NZ_CP028115.1 See Comparison
NZ_CP027444.1 See Comparison
NZ_CP027556.1 See Comparison
NZ_CP027583.1 See Comparison
NZ_AP027164.1 See Comparison
NZ_AP024925.1 See Comparison
NZ_AP024922.1 See Comparison
NZ_AP027167.1 See Comparison
NZ_AP027198.1 See Comparison
NZ_AP027161.1 See Comparison
NZ_AP027172.1 See Comparison
NZ_CP031344.1 See Comparison
NZ_CP031348.1 See Comparison
NZ_CP035771.1 See Comparison
NZ_CP031346.1 See Comparison
NZ_CP035773.1 See Comparison
NZ_CP024660.1 See Comparison
NZ_CP031342.1 See Comparison
NZ_CP031354.1 See Comparison
CP060104.1 See Comparison
NZ_CP101295.1 See Comparison
NZ_CP101311.1 See Comparison
AP019707.1 See Comparison
AP019704.1 See Comparison
NZ_CP031344.1 See Comparison
NZ_CP037944.1 See Comparison
NZ_CP037946.1 See Comparison
NZ_CP028113.1 See Comparison
NZ_CP028115.1 See Comparison
NZ_CP027578.1 See Comparison
NZ_CP027444.1 See Comparison
NZ_CP027556.1 See Comparison
NZ_CP027583.1 See Comparison
NZ_AP024925.1 See Comparison
NZ_AP024922.1 See Comparison
NZ_AP027164.1 See Comparison
NZ_AP027167.1 See Comparison
NZ_AP027198.1 See Comparison
NZ_AP027161.1 See Comparison
NZ_AP027172.1 See Comparison
NZ_CP031348.1 See Comparison
NZ_CP035771.1 See Comparison
NZ_CP031346.1 See Comparison
NZ_CP035773.1 See Comparison
NZ_CP024660.1 See Comparison
NZ_CP031342.1 See Comparison
NZ_CP031354.1 See Comparison
CP060104.1 See Comparison
NZ_CP101295.1 See Comparison
NZ_CP101311.1 See Comparison
NZ_CP101295.1 See Comparison
AP019707.1 See Comparison
AP019704.1 See Comparison
NZ_CP028113.1 See Comparison
NZ_CP028115.1 See Comparison
NZ_AP024925.1 See Comparison
NZ_AP024922.1 See Comparison
NZ_AP027164.1 See Comparison
NZ_AP027167.1 See Comparison
NZ_AP027198.1 See Comparison
NZ_AP027161.1 See Comparison
NZ_AP027172.1 See Comparison
NZ_CP031344.1 See Comparison
NZ_CP031348.1 See Comparison
NZ_CP035771.1 See Comparison
NZ_CP031346.1 See Comparison
NZ_CP035773.1 See Comparison
NZ_CP024660.1 See Comparison
NZ_CP031342.1 See Comparison
NZ_CP031354.1 See Comparison
NZ_CP037944.1 See Comparison
NZ_CP037946.1 See Comparison
NZ_CP027578.1 See Comparison
NZ_CP027444.1 See Comparison
NZ_CP027556.1 See Comparison
NZ_CP027583.1 See Comparison
NZ_CP101311.1 See Comparison
CP060104.1 See Comparison
AP019707.1 See Comparison
AP019704.1 See Comparison
NZ_CP028113.1 See Comparison
NZ_CP037944.1 See Comparison
NZ_CP037946.1 See Comparison
NZ_CP028115.1 See Comparison
NZ_AP024925.1 See Comparison
NZ_CP027578.1 See Comparison
NZ_CP027444.1 See Comparison
NZ_CP027556.1 See Comparison
NZ_CP027583.1 See Comparison
NZ_AP024922.1 See Comparison
NZ_AP027164.1 See Comparison
NZ_AP027167.1 See Comparison
NZ_AP027198.1 See Comparison
NZ_AP027161.1 See Comparison
NZ_AP027172.1 See Comparison
CP060104.1 See Comparison
NZ_CP031344.1 See Comparison
NZ_CP031348.1 See Comparison
NZ_CP035771.1 See Comparison
NZ_CP031346.1 See Comparison
NZ_CP035773.1 See Comparison
NZ_CP024660.1 See Comparison
NZ_CP031342.1 See Comparison
NZ_CP031354.1 See Comparison
NZ_CP101295.1 See Comparison
NZ_CP101311.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore