Plasmid NZ_CP029385.1

Sequence

Nucleotide Information

Accession NZ_CP029385.1
Description Klebsiella pneumoniae subsp. pneumoniae strain SCKP040074 plasmid p1_040074, complete sequence
Source refseq
Topology circular
Length 1934 bp
GC Content 0.51 %
Created at NCBI May 15, 2018



Assembly

Genome Data Information

Accession GCF_003037615.2
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 8027262

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Sichuan
Original Query Type name
Coordinates (Lat/Lon) 30.50/102.50
Address China,Sichuan

ECOSYSTEM
Original Query Homo sapiens,Pure Culture
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OW967973.1 See Comparison
NZ_CP090939.1 See Comparison
NZ_CP089435.1 See Comparison
HG796440.1 See Comparison
NZ_OP242264.1 See Comparison
NZ_AP027692.1 See Comparison
NZ_AP027951.1 See Comparison
NZ_CP154594.1 See Comparison
NZ_CP115728.1 See Comparison
NZ_OW967973.1 See Comparison
NZ_CP154594.1 See Comparison
NZ_CP089435.1 See Comparison
NZ_AP027951.1 See Comparison
NZ_CP090939.1 See Comparison
HG796440.1 See Comparison
NZ_AP027692.1 See Comparison
NZ_OP242264.1 See Comparison
NZ_CP115728.1 See Comparison
NZ_OW967973.1 See Comparison
NZ_CP090939.1 See Comparison
NZ_CP154594.1 See Comparison
NZ_AP027951.1 See Comparison
NZ_CP089435.1 See Comparison
HG796440.1 See Comparison
NZ_AP027692.1 See Comparison
NZ_CP090939.1 See Comparison
NZ_CP089435.1 See Comparison
NZ_AP027951.1 See Comparison
NZ_AP027692.1 See Comparison
NZ_CP115728.1 See Comparison
NZ_OW967973.1 See Comparison
NZ_OP242264.1 See Comparison
NZ_CP115728.1 See Comparison
NZ_OW967973.1 See Comparison
NZ_CP090939.1 See Comparison
HG796440.1 See Comparison
NZ_CP154594.1 See Comparison
NZ_OP242264.1 See Comparison
HG796440.1 See Comparison
NZ_CP089435.1 See Comparison
NZ_CP154594.1 See Comparison
NZ_CP029385.1 See Comparison
NZ_AP027951.1 See Comparison
NZ_AP027692.1 See Comparison
NZ_OW967973.1 See Comparison
NZ_CP115728.1 See Comparison
NZ_OP242264.1 See Comparison
NZ_CP090939.1 See Comparison
NZ_CP089435.1 See Comparison
NZ_AP027951.1 See Comparison
NZ_OP242264.1 See Comparison
HG796440.1 See Comparison
NZ_CP154594.1 See Comparison
NZ_AP027692.1 See Comparison
NZ_CP115728.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore