Plasmid NZ_CP027257.1

Sequence

Nucleotide Information

Accession NZ_CP027257.1
Description Escherichia coli strain EC11 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 31229 bp
GC Content 0.42 %
Created at NCBI March 16, 2018



Assembly

Genome Data Information

Accession GCF_002996665.1
Assembly Coverage 358


Biosample

Curated Collection Information
Accession 8619547

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Shanghai
Original Query Type name
Coordinates (Lat/Lon) 31.23/121.49
Address China,Shanghai

ECOSYSTEM
Original Query enviroment sample,cow dung
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OM038690.1 See Comparison
NZ_OM069355.1 See Comparison
NZ_OM038691.1 See Comparison
NZ_MK875283.1 See Comparison
NZ_KX570748.1 See Comparison
NZ_CP020376.1 See Comparison
NZ_KY582848.1 See Comparison
NZ_CP021418.1 See Comparison
NZ_MK875281.1 See Comparison
NZ_KY582848.1 See Comparison
NZ_KX570748.1 See Comparison
NZ_CP020376.1 See Comparison
NZ_MK875283.1 See Comparison
NZ_MK875281.1 See Comparison
NZ_OM038690.1 See Comparison
NZ_OM069355.1 See Comparison
NZ_OM038691.1 See Comparison
NZ_KY582848.1 See Comparison
NZ_CP021418.1 See Comparison
NZ_OM038690.1 See Comparison
NZ_OM069355.1 See Comparison
NZ_OM038691.1 See Comparison
NZ_KX570748.1 See Comparison
NZ_MK875283.1 See Comparison
NZ_CP020376.1 See Comparison
NZ_CP021418.1 See Comparison
NZ_MK875281.1 See Comparison
NZ_OM038690.1 See Comparison
NZ_OM069355.1 See Comparison
NZ_OM038691.1 See Comparison
NZ_KY582848.1 See Comparison
NZ_CP021418.1 See Comparison
NZ_CP020376.1 See Comparison
NZ_MK875283.1 See Comparison
NZ_MK875281.1 See Comparison
NZ_KX570748.1 See Comparison
NZ_KX570748.1 See Comparison
NZ_CP021418.1 See Comparison
NZ_OM038690.1 See Comparison
NZ_OM069355.1 See Comparison
NZ_OM038691.1 See Comparison
NZ_KY582848.1 See Comparison
NZ_CP020376.1 See Comparison
NZ_OM038690.1 See Comparison
NZ_MK875283.1 See Comparison
NZ_MK875281.1 See Comparison
NZ_OM069355.1 See Comparison
NZ_OM038691.1 See Comparison
NZ_MK875283.1 See Comparison
NZ_KY582848.1 See Comparison
NZ_CP020376.1 See Comparison
NZ_CP027257.1 See Comparison
NZ_KX570748.1 See Comparison
NZ_CP021418.1 See Comparison
NZ_MK875281.1 See Comparison
NZ_KY582848.1 See Comparison
NZ_OM038690.1 See Comparison
NZ_OM069355.1 See Comparison
NZ_OM038691.1 See Comparison
NZ_MK875281.1 See Comparison
NZ_CP021418.1 See Comparison
NZ_MK875283.1 See Comparison
NZ_KX570748.1 See Comparison
NZ_CP020376.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2