Plasmid NZ_CP020376.1

Sequence

Nucleotide Information

Accession NZ_CP020376.1
Description Escherichia coli strain ICBEC79H plasmid pICBEC79Hmcr, complete sequence
Source refseq
Topology circular
Length 31224 bp
GC Content 0.42 %
Created at NCBI Jan. 16, 2020



Biosample

Curated Collection Information
Accession 5761693

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 5.77926S;35.2009W
Original Query Type coordinates
Coordinates (Lat/Lon) -5.78/-35.20
Address Rua General Gustavo Cordeiro de Farias, Rocas, Região Leste, Natal, Região Geográfica Imediata de Natal, Região Geográfica Intermediária de Natal, Rio Grande do Norte, Northeast Region, 59012-310, Brazil

ECOSYSTEM
Original Query Homo sapiens,Urine infection
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Sex female

DISEASE
Original Query Urinary infection tract
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP027257.1 See Comparison
NZ_KX570748.1 See Comparison
NZ_KY582848.1 See Comparison
NZ_KX570748.1 See Comparison
NZ_CP021418.1 See Comparison
NZ_MK875281.1 See Comparison
NZ_MK875283.1 See Comparison
NZ_OM038690.1 See Comparison
NZ_OM069355.1 See Comparison
NZ_OM038691.1 See Comparison
NZ_CP027257.1 See Comparison
NZ_KY582848.1 See Comparison
NZ_CP027257.1 See Comparison
NZ_CP021418.1 See Comparison
NZ_MK875283.1 See Comparison
NZ_MK875281.1 See Comparison
NZ_OM038690.1 See Comparison
NZ_OM069355.1 See Comparison
NZ_OM038691.1 See Comparison
NZ_KX570748.1 See Comparison
NZ_KY582848.1 See Comparison
NZ_CP027257.1 See Comparison
NZ_CP021418.1 See Comparison
NZ_MK875283.1 See Comparison
NZ_MK875281.1 See Comparison
NZ_OM038690.1 See Comparison
NZ_OM069355.1 See Comparison
NZ_OM038691.1 See Comparison
NZ_MK875283.1 See Comparison
NZ_KY582848.1 See Comparison
NZ_CP021418.1 See Comparison
NZ_KX570748.1 See Comparison
NZ_MK875281.1 See Comparison
NZ_OM038690.1 See Comparison
NZ_OM069355.1 See Comparison
NZ_OM038691.1 See Comparison
NZ_KY582848.1 See Comparison
NZ_CP027257.1 See Comparison
NZ_OM038690.1 See Comparison
NZ_KX570748.1 See Comparison
NZ_CP021418.1 See Comparison
NZ_CP020376.1 See Comparison
NZ_MK875283.1 See Comparison
NZ_MK875281.1 See Comparison
NZ_OM069355.1 See Comparison
NZ_OM038691.1 See Comparison
NZ_KX570748.1 See Comparison
NZ_KY582848.1 See Comparison
NZ_CP027257.1 See Comparison
NZ_CP021418.1 See Comparison
NZ_OM038690.1 See Comparison
NZ_MK875283.1 See Comparison
NZ_MK875281.1 See Comparison
NZ_OM069355.1 See Comparison
NZ_OM038691.1 See Comparison
NZ_CP027257.1 See Comparison
NZ_KY582848.1 See Comparison
NZ_MK875283.1 See Comparison
NZ_CP021418.1 See Comparison
NZ_KX570748.1 See Comparison
NZ_MK875281.1 See Comparison
NZ_OM038690.1 See Comparison
NZ_OM069355.1 See Comparison
NZ_OM038691.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2