Plasmid NZ_CP027204.2

Sequence

Nucleotide Information

Accession	NZ_CP027204.2
Description	Escherichia coli strain WCHEC025943 plasmid pNDM5_025943, complete sequence
Source	refseq
Topology	circular
Length	44088 bp
GC Content	0.46 %
Created at NCBI	Feb. 27, 2018

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_002811555.3
Assembly Coverage	200

Biosample

Curated Collection Information

Accession	7510673

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	China,Sichuan,Chengdu
Original Query Type	name
Coordinates (Lat/Lon)	30.68/104.06
Address	China,Sichuan,Chengdu

ECOSYSTEM

Original Query	Culture,Sewage
Classification	cell_culture,sewage,wastewater
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP049602.1	See Comparison
NZ_MK262709.1	See Comparison
NZ_CP061747.1	See Comparison
NZ_MT129534.1	See Comparison
NZ_CP123264.1	See Comparison
NZ_MT621568.1	See Comparison
NZ_MT621567.1	See Comparison
NZ_CP024814.1	See Comparison
NZ_CP137171.1	See Comparison
NZ_CP054409.1	See Comparison
NZ_AP023227.1	See Comparison
CP142550.1	See Comparison
NZ_CP149843.1	See Comparison
NZ_CP049602.1	See Comparison
NZ_MH286946.1	See Comparison
NZ_MK262709.1	See Comparison
NZ_MT129534.1	See Comparison
NZ_CP061747.1	See Comparison
NZ_MT621567.1	See Comparison
NZ_CP149843.1	See Comparison
NZ_CP054409.1	See Comparison
NZ_CP123264.1	See Comparison
NZ_MT621568.1	See Comparison
NZ_CP024814.1	See Comparison
NZ_CP137171.1	See Comparison
NZ_CP149843.1	See Comparison
CP142550.1	See Comparison
NZ_CP049602.1	See Comparison
NZ_MT621568.1	See Comparison
NZ_MT621567.1	See Comparison
NZ_CP024814.1	See Comparison
NZ_CP137171.1	See Comparison
NZ_CP123264.1	See Comparison
NZ_AP023227.1	See Comparison
NZ_MH286946.1	See Comparison
NZ_MK262709.1	See Comparison
NZ_CP061747.1	See Comparison
NZ_MT129534.1	See Comparison
NZ_CP054409.1	See Comparison
NZ_CP061747.1	See Comparison
CP142550.1	See Comparison
NZ_AP023227.1	See Comparison
NZ_CP049602.1	See Comparison
NZ_MH286946.1	See Comparison
NZ_MK262709.1	See Comparison
NZ_MT129534.1	See Comparison
NZ_CP054409.1	See Comparison
NZ_MT621568.1	See Comparison
NZ_MT621567.1	See Comparison
NZ_CP024814.1	See Comparison
NZ_CP137171.1	See Comparison
NZ_CP149843.1	See Comparison
NZ_CP123264.1	See Comparison
NZ_MH286946.1	See Comparison
CP142550.1	See Comparison
NZ_AP023227.1	See Comparison
NZ_MK262709.1	See Comparison
NZ_CP049602.1	See Comparison
NZ_MT621568.1	See Comparison
NZ_MT129534.1	See Comparison
NZ_CP061747.1	See Comparison
NZ_MT621567.1	See Comparison
NZ_CP054409.1	See Comparison
NZ_AP023227.1	See Comparison
NZ_CP137171.1	See Comparison
NZ_CP024814.1	See Comparison
NZ_CP123264.1	See Comparison
NZ_CP149843.1	See Comparison
CP142550.1	See Comparison
NZ_CP061747.1	See Comparison
NZ_MH286946.1	See Comparison
NZ_CP049602.1	See Comparison
NZ_MK262709.1	See Comparison
NZ_MT129534.1	See Comparison
NZ_MT621568.1	See Comparison
NZ_MT621567.1	See Comparison
NZ_CP027204.2	See Comparison
NZ_CP054409.1	See Comparison
NZ_CP024814.1	See Comparison
NZ_CP137171.1	See Comparison
NZ_CP123264.1	See Comparison
NZ_CP149843.1	See Comparison
CP142550.1	See Comparison
NZ_AP023227.1	See Comparison
NZ_MH286946.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore