Plasmid NZ_CP027145.1

Sequence

Nucleotide Information

Accession NZ_CP027145.1
Description Enterobacter hormaechei subsp. hoffmannii strain AR_0365 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 101548 bp
GC Content 0.54 %
Created at NCBI March 12, 2018



Assembly

Genome Data Information

Accession GCF_002968455.1
Assembly Coverage 16.64


Biosample

Curated Collection Information
Accession 7291508

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP027145.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGtraUcopy
PGAGtrbCcopy
PGAGtraNcopy
PGAGtraFcopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGtrbBcopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 137 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_014107_00145MPF_F5971592plus93.9761000601
mate-pair-formationNC_014107_00146MPF_F16062226plus91.3461001.04e-122389
mate-pair-formationNC_014107_00154MPF_F68328202plus96.9371000870
mate-pair-formationNC_014107_00155MPF_F820511492plus84.46610001816
mate-pair-formationNC_014107_00159MPF_T1368416248plus90.05810001531
mate-pair-formationNC_014107_00125MPF_F9090391202plus941001.7e-51179
mate-pair-formationNC_014107_00126MPF_F9121191789plus92.2281001.45e-115367
mate-pair-formationNC_014107_00127MPF_F9180492541plus95.1221002.15e-144452
mate-pair-formationNC_009425_00108MPF_F9254793947plus88.2231000742
mate-pair-formationNC_014107_00135MPF_F9533895889plus90.8111004.37e-93302
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 15 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2