Plasmid NZ_CP027144.1
Sequence
Nucleotide Information
| Accession | NZ_CP027144.1 |
|---|---|
| Description | Enterobacter hormaechei subsp. hoffmannii strain AR_0365 plasmid unnamed1, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 328871 bp |
| GC Content | 0.49 % |
| Created at NCBI | March 12, 2018 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Enterobacter hormaechei (1812934) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Enterobacter (547) |
| Species | Enterobacter_hormaechei (158836) |
| Strain |
Biosample
Curated Collection Information
| Accession | 7291508 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | None |
|---|---|
| Original Query Type | None |
| Coordinates (Lat/Lon) | |
| Address | None |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
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G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| rgi | EreA2 | copy | ||
| rgi | aadA3 | copy | ||
| rgi | EreA2 | copy | ||
| rgi | AAC(6')-Ib10 | copy | ||
| rgi | Brucella suis mprF | copy | ||
| amrfinderplus | pcoS | copy | ||
| amrfinderplus | mcr-9.1 | copy | ||
| amrfinderplus | qacEdelta1 | copy | ||
| amrfinderplus | qacEdelta1 | copy | ||
| amrfinderplus | aac(6')-Ib3 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 368 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| mate-pair-formation | NC_016976_00061 | MPF_T | 12119 | 12580 | plus | 88.462 | 100 | 5.97e-80 | 280 |
| mate-pair-formation | NC_008757_00079 | MPF_T | 110861 | 111850 | minus | 83.383 | 100 | 1.09e-150 | 475 |
| mate-pair-formation | NC_022344_00330 | MPF_T | 111850 | 112551 | minus | 94.872 | 100 | 1.33e-146 | 458 |
| mate-pair-formation | NC_022344_00326 | MPF_T | 115130 | 117499 | minus | 87.975 | 97 | 0 | 1408 |
| mate-pair-formation | NC_022344_00321 | MPF_T | 119704 | 121698 | minus | 90.855 | 100 | 0 | 1137 |
| mate-pair-formation | NC_005211_00200 | MPF_F | 167995 | 169407 | minus | 100 | 100 | 0 | 933 |
| mate-pair-formation | NC_005211_00207 | MPF_F | 177484 | 179565 | plus | 100 | 100 | 0 | 1423 |
| mate-pair-formation | NC_005211_00030 | MPF_F | 263608 | 264666 | minus | 100 | 100 | 0 | 737 |
| mate-pair-formation | NC_021845_00017 | MPF_F | 264808 | 266316 | minus | 99.602 | 100 | 0 | 997 |
| mate-pair-formation | NC_005211_00012 | MPF_T | 285305 | 287983 | minus | 100 | 100 | 0 | 1873 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 18 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |