Plasmid NZ_CP011643.1

Sequence

Nucleotide Information

Accession NZ_CP011643.1
Description Klebsiella pneumoniae strain CAV1596 plasmid pCAV1596-2927, complete sequence
Source refseq
Topology circular
Length 2927 bp
GC Content 0.47 %
Created at NCBI June 18, 2015



Assembly

Genome Data Information

Accession GCF_001022235.1
Assembly Coverage 90


Biosample

Curated Collection Information
Accession 3024583

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 38.14N;78.45W
Original Query Type coordinates
Coordinates (Lat/Lon) 38.14/-78.45
Address Aviation Drive, Deerwood, Albemarle County, Virginia, 22936, United States

ECOSYSTEM
Original Query Homo sapiens,Perirectal
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

OX030691.1 See Comparison
OW959917.1 See Comparison
OW969833.1 See Comparison
OW969641.1 See Comparison
OW969638.1 See Comparison
OW968237.1 See Comparison
OW967618.1 See Comparison
OW848853.1 See Comparison
OW849121.1 See Comparison
CP094917.1 See Comparison
CP094911.1 See Comparison
NZ_CP034765.1 See Comparison
OW959917.1 See Comparison
CP128751.1 See Comparison
CP128742.1 See Comparison
OX030691.1 See Comparison
CP125757.1 See Comparison
CP052483.1 See Comparison
CP052420.1 See Comparison
CP052412.1 See Comparison
NZ_CP074557.1 See Comparison
OW968237.1 See Comparison
OW969641.1 See Comparison
OW969638.1 See Comparison
OW969833.1 See Comparison
OW849121.1 See Comparison
OW967618.1 See Comparison
OW848853.1 See Comparison
NZ_CP034765.1 See Comparison
CP094917.1 See Comparison
CP094911.1 See Comparison
CP128751.1 See Comparison
CP128742.1 See Comparison
CP052483.1 See Comparison
CP125757.1 See Comparison
CP052420.1 See Comparison
CP052412.1 See Comparison
NZ_CP074557.1 See Comparison
OX030691.1 See Comparison
OW959917.1 See Comparison
OW969641.1 See Comparison
OW969638.1 See Comparison
OW848853.1 See Comparison
OW968237.1 See Comparison
OW967618.1 See Comparison
OW969833.1 See Comparison
NZ_CP011643.1 See Comparison
OW849121.1 See Comparison
CP094917.1 See Comparison
CP094911.1 See Comparison
NZ_CP034765.1 See Comparison
NZ_CP074557.1 See Comparison
CP128751.1 See Comparison
CP128742.1 See Comparison
CP052412.1 See Comparison
CP125757.1 See Comparison
CP052483.1 See Comparison
CP052420.1 See Comparison
OW959917.1 See Comparison
OX030691.1 See Comparison
OW969641.1 See Comparison
OW969833.1 See Comparison
OW969638.1 See Comparison
OW968237.1 See Comparison
OW849121.1 See Comparison
OW967618.1 See Comparison
OW848853.1 See Comparison
NZ_CP034765.1 See Comparison
CP094917.1 See Comparison
CP094911.1 See Comparison
CP052412.1 See Comparison
CP128751.1 See Comparison
CP128742.1 See Comparison
CP052483.1 See Comparison
CP052420.1 See Comparison
CP125757.1 See Comparison
NZ_CP074557.1 See Comparison
OX030691.1 See Comparison
OW969641.1 See Comparison
OW969833.1 See Comparison
OW959917.1 See Comparison
OW969638.1 See Comparison
OW967618.1 See Comparison
OW968237.1 See Comparison
OW848853.1 See Comparison
CP052412.1 See Comparison
OW849121.1 See Comparison
NZ_CP034765.1 See Comparison
CP125757.1 See Comparison
CP094917.1 See Comparison
CP094911.1 See Comparison
CP128751.1 See Comparison
CP128742.1 See Comparison
OW959917.1 See Comparison
OX030691.1 See Comparison
CP052483.1 See Comparison
CP052420.1 See Comparison
NZ_CP074557.1 See Comparison
CP094917.1 See Comparison
OW969641.1 See Comparison
OW969638.1 See Comparison
OW967618.1 See Comparison
OW969833.1 See Comparison
OW968237.1 See Comparison
OW848853.1 See Comparison
OW849121.1 See Comparison
CP094911.1 See Comparison
CP128751.1 See Comparison
NZ_CP034765.1 See Comparison
CP128742.1 See Comparison
CP052412.1 See Comparison
CP125757.1 See Comparison
CP052483.1 See Comparison
CP052420.1 See Comparison
OX030691.1 See Comparison
NZ_CP074557.1 See Comparison
OW969833.1 See Comparison
OW959917.1 See Comparison
OW968237.1 See Comparison
OW969641.1 See Comparison
OW969638.1 See Comparison
OW849121.1 See Comparison
OW967618.1 See Comparison
OW848853.1 See Comparison
CP128742.1 See Comparison
NZ_CP034765.1 See Comparison
CP094917.1 See Comparison
CP094911.1 See Comparison
CP052483.1 See Comparison
CP128751.1 See Comparison
CP125757.1 See Comparison
CP052420.1 See Comparison
CP052412.1 See Comparison
NZ_CP074557.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2