Plasmid CP052483.1

Sequence

Nucleotide Information

Accession CP052483.1
Description Klebsiella pneumoniae strain C16KP0050 plasmid pC16KP0050-7, complete sequence
Source insd
Topology circular
Length 2927 bp
GC Content 0.47 %
Created at NCBI May 4, 2020



Assembly

Genome Data Information

Accession GCF_012970405.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 14609883

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.82N;128.16E
Original Query Type coordinates
Coordinates (Lat/Lon) 37.82/128.16
Address Ahopsari-ro, Naechon-myeon, Hongcheon-gun, Gangwon State, 25162, South Korea

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP074557.1 See Comparison
OX030691.1 See Comparison
OW959917.1 See Comparison
OW969833.1 See Comparison
OW969641.1 See Comparison
OW969638.1 See Comparison
OW968237.1 See Comparison
OW967618.1 See Comparison
OW848853.1 See Comparison
OW849121.1 See Comparison
CP094917.1 See Comparison
CP094911.1 See Comparison
NZ_CP034765.1 See Comparison
NZ_CP011643.1 See Comparison
CP125757.1 See Comparison
CP128751.1 See Comparison
CP128742.1 See Comparison
CP052420.1 See Comparison
CP052412.1 See Comparison
NZ_CP074557.1 See Comparison
OX030691.1 See Comparison
OW969833.1 See Comparison
OW959917.1 See Comparison
OW968237.1 See Comparison
OW969641.1 See Comparison
OW969638.1 See Comparison
OW967618.1 See Comparison
OW848853.1 See Comparison
NZ_CP011643.1 See Comparison
OW849121.1 See Comparison
CP094917.1 See Comparison
CP094911.1 See Comparison
NZ_CP034765.1 See Comparison
CP125757.1 See Comparison
CP128742.1 See Comparison
CP128751.1 See Comparison
CP052483.1 See Comparison
CP052420.1 See Comparison
CP052412.1 See Comparison
NZ_CP074557.1 See Comparison
OW969833.1 See Comparison
OW959917.1 See Comparison
OW969641.1 See Comparison
OX030691.1 See Comparison
CP094917.1 See Comparison
OW968237.1 See Comparison
OW967618.1 See Comparison
OW849121.1 See Comparison
OW969638.1 See Comparison
OW848853.1 See Comparison
CP094911.1 See Comparison
NZ_CP074557.1 See Comparison
CP128751.1 See Comparison
CP128742.1 See Comparison
CP052420.1 See Comparison
CP052412.1 See Comparison
NZ_CP011643.1 See Comparison
NZ_CP034765.1 See Comparison
CP125757.1 See Comparison
OX030691.1 See Comparison
OW969833.1 See Comparison
OW959917.1 See Comparison
OW969641.1 See Comparison
OW969638.1 See Comparison
OW968237.1 See Comparison
NZ_CP011643.1 See Comparison
OW967618.1 See Comparison
OW849121.1 See Comparison
OW848853.1 See Comparison
CP094917.1 See Comparison
CP094911.1 See Comparison
NZ_CP034765.1 See Comparison
CP052412.1 See Comparison
CP128751.1 See Comparison
CP128742.1 See Comparison
CP125757.1 See Comparison
NZ_CP074557.1 See Comparison
CP052420.1 See Comparison
OW959917.1 See Comparison
OX030691.1 See Comparison
OW969638.1 See Comparison
OW969833.1 See Comparison
CP094917.1 See Comparison
OW849121.1 See Comparison
OW969641.1 See Comparison
OW968237.1 See Comparison
OW967618.1 See Comparison
OW848853.1 See Comparison
CP094911.1 See Comparison
NZ_CP034765.1 See Comparison
NZ_CP011643.1 See Comparison
CP125757.1 See Comparison
CP128751.1 See Comparison
CP128742.1 See Comparison
OW959917.1 See Comparison
CP052412.1 See Comparison
CP052420.1 See Comparison
NZ_CP074557.1 See Comparison
OX030691.1 See Comparison
OW969641.1 See Comparison
OW969833.1 See Comparison
OW969638.1 See Comparison
OW968237.1 See Comparison
OW967618.1 See Comparison
OW848853.1 See Comparison
NZ_CP011643.1 See Comparison
OW849121.1 See Comparison
CP094917.1 See Comparison
CP094911.1 See Comparison
CP125757.1 See Comparison
CP128751.1 See Comparison
CP128742.1 See Comparison
NZ_CP034765.1 See Comparison
CP052420.1 See Comparison
CP052412.1 See Comparison


Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: CP052420.1
    • Description: Klebsiella pneumoniae strain C16KP0189 plasmid pC16KP0189-6, complete sequence
    • Source: insd
    • Created at NCBI: May 4, 2020

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (573)
  • Biosample
    Accession: 14609895
  • GEOGRAPHICAL INFORMATION
    • Original Query: 37.82N;128.16E
    • Original Query Type: coordinates
    • Address: Ahopsari-ro, Naechon-myeon, Hongcheon-gun, Gangwon State, 25162, South Korea
    • Coordinates (Lat/Lon): 37.82/128.16
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Bloodstream infection
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore