Plasmid NZ_CP009169.1

Sequence

Nucleotide Information

Accession NZ_CP009169.1
Description Escherichia coli 1303 plasmid p1303_5, complete sequence
Source refseq
Topology circular
Length 4671 bp
GC Content 0.46 %
Created at NCBI Feb. 2, 2015



Assembly

Genome Data Information

Accession GCF_000829985.1
Assembly Coverage 95


Biosample

Curated Collection Information
Accession 2949643

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Germany,Hannover
Original Query Type name
Coordinates (Lat/Lon) 52.37/9.74
Address Germany,Hannover

ECOSYSTEM
Original Query Bos taurus,udder,udder acute mastitis
Classification disease,host_associated,mamary
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP
  • Mastitis (DOID:10690 )
    • A breast disease characterized by painful infection of the breast tissue.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP132980.1 See Comparison
CP057890.1 See Comparison
CP057887.1 See Comparison
CP057881.1 See Comparison
CP057625.1 See Comparison
CP057599.1 See Comparison
CP057593.1 See Comparison
CP057586.1 See Comparison
CP057576.1 See Comparison
CP057573.1 See Comparison
CP057467.1 See Comparison
CP057061.1 See Comparison
CP057054.1 See Comparison
CP057049.1 See Comparison
CP057061.1 See Comparison
NZ_CP132980.1 See Comparison
CP099113.1 See Comparison
CP057054.1 See Comparison
CP057049.1 See Comparison
CP057890.1 See Comparison
CP099113.1 See Comparison
CP057887.1 See Comparison
CP057881.1 See Comparison
CP057625.1 See Comparison
CP057599.1 See Comparison
CP057593.1 See Comparison
CP057586.1 See Comparison
CP057576.1 See Comparison
CP057573.1 See Comparison
CP057467.1 See Comparison
CP057049.1 See Comparison
NZ_CP132980.1 See Comparison
CP099113.1 See Comparison
CP057890.1 See Comparison
CP057887.1 See Comparison
CP057881.1 See Comparison
CP057625.1 See Comparison
CP057599.1 See Comparison
CP057593.1 See Comparison
CP057586.1 See Comparison
CP057576.1 See Comparison
CP057573.1 See Comparison
CP057467.1 See Comparison
CP057061.1 See Comparison
CP057054.1 See Comparison
NZ_CP132980.1 See Comparison
NZ_CP009169.1 See Comparison
NZ_CP132980.1 See Comparison
CP057890.1 See Comparison
CP057887.1 See Comparison
CP057881.1 See Comparison
CP057625.1 See Comparison
CP057599.1 See Comparison
CP057593.1 See Comparison
CP057586.1 See Comparison
CP057576.1 See Comparison
CP057573.1 See Comparison
CP057467.1 See Comparison
CP057061.1 See Comparison
CP057054.1 See Comparison
CP057049.1 See Comparison
CP099113.1 See Comparison
CP057890.1 See Comparison
CP057625.1 See Comparison
CP057599.1 See Comparison
CP057593.1 See Comparison
CP057586.1 See Comparison
CP057576.1 See Comparison
CP057573.1 See Comparison
CP057467.1 See Comparison
CP057061.1 See Comparison
CP057054.1 See Comparison
CP057049.1 See Comparison
CP057887.1 See Comparison
CP057881.1 See Comparison
NZ_CP132980.1 See Comparison
CP057890.1 See Comparison
CP057887.1 See Comparison
CP057881.1 See Comparison
NZ_CP132980.1 See Comparison
CP057625.1 See Comparison
CP057599.1 See Comparison
CP057593.1 See Comparison
CP057586.1 See Comparison
CP057576.1 See Comparison
CP057573.1 See Comparison
CP057467.1 See Comparison
CP057061.1 See Comparison
CP057054.1 See Comparison
CP057049.1 See Comparison
CP099113.1 See Comparison
CP057625.1 See Comparison
CP057599.1 See Comparison
CP057593.1 See Comparison
CP057586.1 See Comparison
CP057576.1 See Comparison
CP057573.1 See Comparison
CP057467.1 See Comparison
CP057061.1 See Comparison
CP057054.1 See Comparison
CP057049.1 See Comparison
CP099113.1 See Comparison
CP057890.1 See Comparison
CP057887.1 See Comparison
CP057881.1 See Comparison
CP099113.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2