Plasmid CP057586.1

Sequence

Nucleotide Information

Accession CP057586.1
Description Escherichia coli strain RHB22-C05 plasmid pRHB22-C05_3, complete sequence
Source insd
Topology circular
Length 4671 bp
GC Content 0.46 %
Created at NCBI July 29, 2020



Assembly

Genome Data Information

Accession GCA_013887055.1
Assembly Coverage 125.786


Biosample

Curated Collection Information
Accession 15148201

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled cattle faecal samples collected from floor of farm
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP057890.1 See Comparison
CP057887.1 See Comparison
CP057881.1 See Comparison
CP057625.1 See Comparison
CP057599.1 See Comparison
CP057593.1 See Comparison
CP057576.1 See Comparison
CP057573.1 See Comparison
CP057467.1 See Comparison
CP057061.1 See Comparison
CP057054.1 See Comparison
CP057049.1 See Comparison
CP099113.1 See Comparison
CP057890.1 See Comparison
CP057887.1 See Comparison
CP057881.1 See Comparison
CP057625.1 See Comparison
CP057599.1 See Comparison
CP057593.1 See Comparison
CP057576.1 See Comparison
CP057573.1 See Comparison
CP057467.1 See Comparison
CP057061.1 See Comparison
CP057054.1 See Comparison
CP057049.1 See Comparison
CP099113.1 See Comparison
CP099113.1 See Comparison
NZ_CP009169.1 See Comparison
NZ_CP009169.1 See Comparison
CP057890.1 See Comparison
CP057887.1 See Comparison
CP057881.1 See Comparison
CP057625.1 See Comparison
CP057599.1 See Comparison
CP057593.1 See Comparison
CP057576.1 See Comparison
CP057573.1 See Comparison
CP057467.1 See Comparison
CP057061.1 See Comparison
CP057054.1 See Comparison
CP057049.1 See Comparison
NZ_CP009169.1 See Comparison
NZ_CP009169.1 See Comparison
CP057890.1 See Comparison
CP057887.1 See Comparison
CP057881.1 See Comparison
CP057625.1 See Comparison
CP057599.1 See Comparison
CP057593.1 See Comparison
CP057576.1 See Comparison
CP057573.1 See Comparison
CP057467.1 See Comparison
CP057061.1 See Comparison
CP057054.1 See Comparison
CP057049.1 See Comparison
CP099113.1 See Comparison
CP057625.1 See Comparison
CP057890.1 See Comparison
CP057887.1 See Comparison
CP057881.1 See Comparison
CP057599.1 See Comparison
CP057593.1 See Comparison
CP057576.1 See Comparison
CP057573.1 See Comparison
CP057467.1 See Comparison
CP057061.1 See Comparison
CP057054.1 See Comparison
CP057049.1 See Comparison
CP099113.1 See Comparison
NZ_CP009169.1 See Comparison
CP057625.1 See Comparison
CP057599.1 See Comparison
CP057593.1 See Comparison
CP057586.1 See Comparison
CP057576.1 See Comparison
CP057573.1 See Comparison
CP057467.1 See Comparison
CP057061.1 See Comparison
CP057054.1 See Comparison
CP057049.1 See Comparison
CP099113.1 See Comparison
CP057061.1 See Comparison
CP057054.1 See Comparison
CP057049.1 See Comparison
CP099113.1 See Comparison
NZ_CP009169.1 See Comparison
CP057890.1 See Comparison
CP057887.1 See Comparison
CP057881.1 See Comparison
NZ_CP009169.1 See Comparison
CP057890.1 See Comparison
CP057887.1 See Comparison
CP057881.1 See Comparison
CP057625.1 See Comparison
CP057599.1 See Comparison
CP057593.1 See Comparison
CP057576.1 See Comparison
CP057573.1 See Comparison
CP057467.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2