Plasmid NZ_AP022146.1

Sequence

Nucleotide Information

Accession	NZ_AP022146.1
Description	Klebsiella quasipneumoniae strain WP5-S18-ESBL-05 plasmid pWP5-S18-ESBL-05_4, complete sequence
Source	refseq
Topology	circular
Length	122247 bp
GC Content	0.54 %
Created at NCBI	Aug. 13, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Klebsiella quasipneumoniae (1463165)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Klebsiella (570)
Species	Klebsiella_quasipneumoniae (1463165)
Strain

Assembly

Genome Data Information

Accession	GCF_014169355.1
Assembly Coverage	195

Biosample

Curated Collection Information

Accession	15592056

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	35.6538N;139.5126E
Original Query Type	coordinates
Coordinates (Lat/Lon)	35.65/139.51
Address	多摩川サイクリングロード, Oshitatecho 5-chome, Fuchu, Tokyo, 206-0811, Japan

ECOSYSTEM

Original Query	None
Classification	None
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_AP022146.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

Reds

Oranges

Greens

100

Hex

R

G

B

Search:

Source	Element Name	Display	Sequence	Favorite

PGAG	IS5 family transposase		copy
PGAG	traH		copy
PGAG	traG		copy
PGAG	hypothetical protein		copy
PGAG	hypothetical protein		copy
PGAG	traD		copy
PGAG	traI		copy
PGAG	traX		copy
PGAG	fertility inhibition protein FinO		copy
PGAG	DUF6404 family protein		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 129 entries

…

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Loading...
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

Loading...
NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	000126__FO834904	IncFII	20755	20983	minus	90.086	100	2.74e-77	294
replicon	000207__CP025517	IncR	96297	97163	minus	99.423	100	0	1574
relaxase	CP035180_00077	MOBF	9550	10302	plus	94.422	98	0	387
relaxase	NC_021231_00058	MOBF	10314	15572	plus	96.634	100	0	3307
mate-pair-formation	NC_019165_00034	MPF_F	1112	2467	plus	95.354	99	0	799
mate-pair-formation	NC_019155_00032	MPF_F	2470	5298	plus	92.683	98	0	1678
mate-pair-formation	NC_021502_00150	MPF_T	8005	10311	plus	98.182	100	0	1434
mate-pair-formation	NC_006143_00077	MPF_T	39874	40920	minus	100	100	0	632
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 8 of 8 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

Loading...
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2