Plasmid NC_024963.1

Sequence

Nucleotide Information

Accession NC_024963.1
Description Staphylococcus aureus plasmid pSWS371, complete sequence
Source refseq
Topology circular
Length 2458 bp
GC Content 0.31 %
Created at NCBI June 20, 2014



Biosample

Curated Collection Information
Accession 14229236

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Netherlands
Original Query Type name
Coordinates (Lat/Lon) 52.24/5.53
Address Netherlands

ECOSYSTEM
Original Query dust from broiler house
Classification dust,inorganic,material
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP115888.1 See Comparison
NZ_CP084446.1 See Comparison
NZ_CP093178.1 See Comparison
NZ_CP098730.1 See Comparison
NZ_CP083261.1 See Comparison
CP027424.1 See Comparison
NZ_CP029648.1 See Comparison
NZ_CP058616.1 See Comparison
CP152460.1 See Comparison
NZ_CP142859.1 See Comparison
CP127673.1 See Comparison
CP127531.1 See Comparison
NZ_CP047825.1 See Comparison
NC_024963.1 See Comparison
NZ_CP084446.1 See Comparison
NZ_CP093178.1 See Comparison
NZ_CP083261.1 See Comparison
NZ_CP115888.1 See Comparison
NZ_CP098730.1 See Comparison
CP127531.1 See Comparison
NZ_CP029648.1 See Comparison
CP027424.1 See Comparison
NZ_CP047825.1 See Comparison
CP152460.1 See Comparison
CP127673.1 See Comparison
NZ_CP142859.1 See Comparison
NZ_CP058616.1 See Comparison
NZ_CP084446.1 See Comparison
NZ_CP115888.1 See Comparison
NZ_CP083261.1 See Comparison
NZ_CP093178.1 See Comparison
NZ_CP098730.1 See Comparison
NZ_CP029648.1 See Comparison
CP127673.1 See Comparison
CP027424.1 See Comparison
CP127531.1 See Comparison
NZ_CP142859.1 See Comparison
CP152460.1 See Comparison
NZ_CP047825.1 See Comparison
NZ_CP115888.1 See Comparison
NZ_CP058616.1 See Comparison
NZ_CP098730.1 See Comparison
NZ_CP084446.1 See Comparison
NZ_CP093178.1 See Comparison
CP027424.1 See Comparison
NZ_CP029648.1 See Comparison
NZ_CP083261.1 See Comparison
NZ_CP115888.1 See Comparison
CP127673.1 See Comparison
CP127531.1 See Comparison
NZ_CP142859.1 See Comparison
NZ_CP047825.1 See Comparison
CP152460.1 See Comparison
NZ_CP058616.1 See Comparison
NZ_CP093178.1 See Comparison
NZ_CP084446.1 See Comparison
CP152460.1 See Comparison
CP027424.1 See Comparison
CP127673.1 See Comparison
CP127531.1 See Comparison
NZ_CP098730.1 See Comparison
NZ_CP083261.1 See Comparison
NZ_CP029648.1 See Comparison
NZ_CP047825.1 See Comparison
NZ_CP142859.1 See Comparison
NZ_CP115888.1 See Comparison
NZ_CP058616.1 See Comparison
NZ_CP093178.1 See Comparison
NZ_CP084446.1 See Comparison
CP027424.1 See Comparison
NZ_CP029648.1 See Comparison
NZ_CP098730.1 See Comparison
NZ_CP083261.1 See Comparison
NZ_CP084446.1 See Comparison
CP127673.1 See Comparison
CP127531.1 See Comparison
CP152460.1 See Comparison
NZ_CP142859.1 See Comparison
NZ_CP047825.1 See Comparison
NZ_CP058616.1 See Comparison
NZ_CP115888.1 See Comparison
NZ_CP093178.1 See Comparison
NZ_CP083261.1 See Comparison
NZ_CP098730.1 See Comparison
NZ_CP029648.1 See Comparison
CP127673.1 See Comparison
CP027424.1 See Comparison
CP127531.1 See Comparison
NZ_CP047825.1 See Comparison
CP152460.1 See Comparison
NZ_CP142859.1 See Comparison
NZ_CP058616.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2