Plasmid CP152460.1

Sequence

Nucleotide Information

Accession CP152460.1
Description Staphylococcus aureus strain BSN132 plasmid pSR42, complete sequence
Source insd
Topology circular
Length 2456 bp
GC Content 0.31 %
Created at NCBI May 1, 2024



Assembly

Genome Data Information

Accession GCA_038975275.1
Assembly Coverage 118


Biosample

Curated Collection Information
Accession 38637710

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 42.33N;83.05W
Original Query Type coordinates
Coordinates (Lat/Lon) 42.33/-83.05
Address Washington Boulevard, Detroit, Wayne County, Michigan, 48226, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 69
Host-associated Sex male

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MN216340.1 See Comparison
NZ_CP115888.1 See Comparison
NZ_CP084446.1 See Comparison
NZ_CP084483.1 See Comparison
NZ_CP093178.1 See Comparison
NZ_CP098730.1 See Comparison
NZ_CP083261.1 See Comparison
NZ_CP010404.1 See Comparison
NC_024963.1 See Comparison
NC_018969.1 See Comparison
NC_022228.1 See Comparison
NC_010685.1 See Comparison
NZ_CP029648.1 See Comparison
NZ_LR130514.1 See Comparison
NZ_CP129368.1 See Comparison
CP027424.1 See Comparison
CP127756.1 See Comparison
CP127589.1 See Comparison
CP127732.1 See Comparison
CP127673.1 See Comparison
CP127531.1 See Comparison
CP127535.1 See Comparison
CP127529.1 See Comparison
CP127533.1 See Comparison
NZ_CP084446.1 See Comparison
LC784003.1 See Comparison
NZ_MN216340.1 See Comparison
CP154384.1 See Comparison
CP151561.1 See Comparison
NZ_CP142859.1 See Comparison
NZ_LC086373.1 See Comparison
NZ_MH423313.1 See Comparison
NZ_CP047825.1 See Comparison
NZ_CP115888.1 See Comparison
NZ_CP084483.1 See Comparison
NZ_CP010404.1 See Comparison
NZ_CP093178.1 See Comparison
NZ_CP083261.1 See Comparison
NZ_CP098730.1 See Comparison
NC_022228.1 See Comparison
NC_018969.1 See Comparison
NC_010685.1 See Comparison
NC_024963.1 See Comparison
CP027424.1 See Comparison
NZ_LR130514.1 See Comparison
NZ_CP029648.1 See Comparison
CP127756.1 See Comparison
NZ_CP129368.1 See Comparison
CP127673.1 See Comparison
CP127732.1 See Comparison
CP152460.1 See Comparison
CP127589.1 See Comparison
CP127531.1 See Comparison
CP127535.1 See Comparison
CP127529.1 See Comparison
CP127533.1 See Comparison
CP154384.1 See Comparison
LC784003.1 See Comparison
CP151561.1 See Comparison
NZ_CP084446.1 See Comparison
NZ_LC086373.1 See Comparison
NZ_MH423313.1 See Comparison
NZ_CP047825.1 See Comparison
NZ_MN216340.1 See Comparison
NZ_CP142859.1 See Comparison
NZ_CP115888.1 See Comparison
NZ_CP084483.1 See Comparison
NZ_CP010404.1 See Comparison
NZ_CP083261.1 See Comparison
NZ_CP093178.1 See Comparison
NZ_CP098730.1 See Comparison
NC_024963.1 See Comparison
NZ_CP029648.1 See Comparison
NC_022228.1 See Comparison
NC_018969.1 See Comparison
NC_010685.1 See Comparison
NZ_LR130514.1 See Comparison
CP027424.1 See Comparison
NZ_CP142859.1 See Comparison
CP127756.1 See Comparison
CP127732.1 See Comparison
CP127673.1 See Comparison
CP127589.1 See Comparison
LC784003.1 See Comparison
NZ_CP129368.1 See Comparison
CP127531.1 See Comparison
CP127535.1 See Comparison
CP127529.1 See Comparison
CP127533.1 See Comparison
CP154384.1 See Comparison
CP151561.1 See Comparison
NZ_CP084446.1 See Comparison
NZ_MH423313.1 See Comparison
NZ_CP047825.1 See Comparison
NZ_LC086373.1 See Comparison
NZ_MN216340.1 See Comparison
NZ_CP115888.1 See Comparison
NZ_CP084483.1 See Comparison
NZ_CP093178.1 See Comparison
NZ_CP098730.1 See Comparison
NZ_CP083261.1 See Comparison
NZ_CP010404.1 See Comparison
NC_024963.1 See Comparison
NC_022228.1 See Comparison
NZ_LR130514.1 See Comparison
NC_018969.1 See Comparison
NC_010685.1 See Comparison
CP027424.1 See Comparison
NZ_CP029648.1 See Comparison
CP127533.1 See Comparison
NZ_CP129368.1 See Comparison
CP154384.1 See Comparison
CP127673.1 See Comparison
CP127589.1 See Comparison
CP127531.1 See Comparison
CP127535.1 See Comparison
CP127529.1 See Comparison
CP127756.1 See Comparison
CP127732.1 See Comparison
CP151561.1 See Comparison
NZ_LC086373.1 See Comparison
NZ_CP142859.1 See Comparison
LC784003.1 See Comparison
NZ_CP115888.1 See Comparison
NZ_MN216340.1 See Comparison
NZ_MH423313.1 See Comparison
NZ_CP047825.1 See Comparison
NZ_CP098730.1 See Comparison
NZ_CP084446.1 See Comparison
NZ_CP084483.1 See Comparison
NZ_CP093178.1 See Comparison
NZ_CP083261.1 See Comparison
NC_022228.1 See Comparison
NZ_CP010404.1 See Comparison
NC_018969.1 See Comparison
NC_024963.1 See Comparison
NC_010685.1 See Comparison
NZ_LR130514.1 See Comparison
CP027424.1 See Comparison
NZ_CP029648.1 See Comparison
NZ_CP129368.1 See Comparison
CP127673.1 See Comparison
CP127589.1 See Comparison
CP127756.1 See Comparison
CP127732.1 See Comparison
CP127531.1 See Comparison
CP127535.1 See Comparison
CP127529.1 See Comparison
CP127533.1 See Comparison
NZ_CP142859.1 See Comparison
CP154384.1 See Comparison
CP151561.1 See Comparison
LC784003.1 See Comparison
NZ_LC086373.1 See Comparison
NZ_MH423313.1 See Comparison
NZ_CP047825.1 See Comparison
NZ_CP115888.1 See Comparison
NZ_MN216340.1 See Comparison
NZ_CP098730.1 See Comparison
NZ_CP084446.1 See Comparison
NZ_CP084483.1 See Comparison
NZ_CP093178.1 See Comparison
NC_010685.1 See Comparison
NZ_CP010404.1 See Comparison
NC_024963.1 See Comparison
NC_022228.1 See Comparison
NZ_CP083261.1 See Comparison
NC_018969.1 See Comparison
NZ_CP129368.1 See Comparison
NZ_CP029648.1 See Comparison
NZ_LR130514.1 See Comparison
CP027424.1 See Comparison
CP127673.1 See Comparison
CP127756.1 See Comparison
CP127732.1 See Comparison
CP127589.1 See Comparison
CP127531.1 See Comparison
CP127535.1 See Comparison
CP127529.1 See Comparison
CP127533.1 See Comparison
CP154384.1 See Comparison
LC784003.1 See Comparison
CP151561.1 See Comparison
NZ_MH423313.1 See Comparison
NZ_CP142859.1 See Comparison
NZ_LC086373.1 See Comparison
NZ_CP093178.1 See Comparison
NZ_CP047825.1 See Comparison
NZ_CP084446.1 See Comparison
NZ_CP084483.1 See Comparison
NZ_MN216340.1 See Comparison
NZ_CP115888.1 See Comparison
NZ_CP083261.1 See Comparison
NZ_CP098730.1 See Comparison
NC_024963.1 See Comparison
NZ_CP010404.1 See Comparison
NC_022228.1 See Comparison
NC_018969.1 See Comparison
CP027424.1 See Comparison
NC_010685.1 See Comparison
NZ_CP029648.1 See Comparison
NZ_LR130514.1 See Comparison
CP127756.1 See Comparison
NZ_CP129368.1 See Comparison
CP127673.1 See Comparison
CP127732.1 See Comparison
CP154384.1 See Comparison
CP127589.1 See Comparison
CP127531.1 See Comparison
CP127535.1 See Comparison
CP127529.1 See Comparison
CP127533.1 See Comparison
NZ_MH423313.1 See Comparison
CP151561.1 See Comparison
LC784003.1 See Comparison
NZ_CP142859.1 See Comparison
NZ_LC086373.1 See Comparison
NZ_CP047825.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2