Plasmid NC_017648.1

Sequence

Nucleotide Information

Accession NC_017648.1
Description Escherichia coli O7:K1 str. CE10 plasmid pCE10B, complete sequence
Source refseq
Topology circular
Length 5163 bp
GC Content 0.47 %
Created at NCBI May 4, 2012



Assembly

Genome Data Information

Accession GCF_000227625.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 2603406

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Homo sapiens,cerebrospinal fluid of a neonate with meningitis
Classification disease,host_associated,nervous_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP
  • Meningitis (DOID:9471 )
    • A central nervous system disease that is characterized by an inflammation of the pia-arachnoid meninges. It can be caused by growth of bacteria, fungi, or parasites within the subarachnoid space or by the growth of bacteria or viruses within the meningeal or ependymal cells.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGreplication initiation proteincopy
PGAGhypothetical proteincopy
PGAGMobA/MobL family proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
MOB-typerrep_cluster_2131copy
MOB-typerMOBQcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 7 of 7 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_019783_00003MOBQ27363659plus98.0521000627
repliconCP010218_00004rep_cluster_213110431957plus92.01710001291
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 2 of 2 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2