Plasmid CP048874.1

Sequence

Nucleotide Information

Accession CP048874.1
Description Escherichia coli strain 2-Pyelo plasmid p2-Pyelo_1, complete sequence
Source insd
Topology circular
Length 5163 bp
GC Content 0.47 %
Created at NCBI Aug. 10, 2020



Assembly

Genome Data Information

Accession GCF_014131655.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 13422969

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Pyelonephritis
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NC_017648.1 See Comparison
NZ_CP040268.1 See Comparison
NZ_CP023898.1 See Comparison
NZ_AP025750.1 See Comparison
NZ_CP146568.1 See Comparison
NZ_CP146560.1 See Comparison
NZ_CP145676.1 See Comparison
CP056805.1 See Comparison
NZ_CP059007.1 See Comparison
CP054452.1 See Comparison
NZ_CP043409.1 See Comparison
NZ_LR890613.1 See Comparison
NC_017648.1 See Comparison
NZ_CP116082.1 See Comparison
NZ_CP101229.1 See Comparison
NZ_CP101205.1 See Comparison
NZ_CP120554.1 See Comparison
NZ_CP040268.1 See Comparison
NZ_AP025750.1 See Comparison
NZ_CP023898.1 See Comparison
NZ_CP145676.1 See Comparison
NZ_CP146568.1 See Comparison
NZ_CP043409.1 See Comparison
NZ_CP146560.1 See Comparison
CP056805.1 See Comparison
NZ_CP059007.1 See Comparison
NC_017648.1 See Comparison
NZ_LR890613.1 See Comparison
NZ_CP101229.1 See Comparison
NZ_CP101205.1 See Comparison
CP054452.1 See Comparison
NZ_CP120554.1 See Comparison
NZ_CP116082.1 See Comparison
NZ_CP040268.1 See Comparison
NZ_CP059007.1 See Comparison
NZ_CP023898.1 See Comparison
NZ_CP145676.1 See Comparison
NZ_AP025750.1 See Comparison
NZ_CP146568.1 See Comparison
NZ_CP146560.1 See Comparison
NZ_CP043409.1 See Comparison
CP056805.1 See Comparison
NZ_LR890613.1 See Comparison
CP054452.1 See Comparison
NZ_CP101229.1 See Comparison
NZ_CP120554.1 See Comparison
NZ_CP116082.1 See Comparison
NZ_CP101205.1 See Comparison
NC_017648.1 See Comparison
NZ_CP023898.1 See Comparison
NZ_CP040268.1 See Comparison
NZ_AP025750.1 See Comparison
NZ_CP145676.1 See Comparison
NZ_CP146568.1 See Comparison
NZ_CP059007.1 See Comparison
NZ_CP146560.1 See Comparison
NZ_CP043409.1 See Comparison
CP056805.1 See Comparison
NZ_LR890613.1 See Comparison
CP054452.1 See Comparison
NZ_CP023898.1 See Comparison
NZ_CP120554.1 See Comparison
NZ_CP040268.1 See Comparison
NZ_CP116082.1 See Comparison
NZ_CP101229.1 See Comparison
NZ_CP101205.1 See Comparison
NC_017648.1 See Comparison
NZ_AP025750.1 See Comparison
NZ_CP145676.1 See Comparison
NZ_CP146568.1 See Comparison
CP056805.1 See Comparison
NZ_CP146560.1 See Comparison
NZ_CP059007.1 See Comparison
NZ_CP043409.1 See Comparison
NZ_CP116082.1 See Comparison
NZ_LR890613.1 See Comparison
CP054452.1 See Comparison
NZ_CP120554.1 See Comparison
NZ_CP023898.1 See Comparison
NZ_CP101229.1 See Comparison
NZ_CP101205.1 See Comparison
NC_017648.1 See Comparison
NZ_CP040268.1 See Comparison
NZ_AP025750.1 See Comparison
NZ_CP146568.1 See Comparison
NZ_CP146560.1 See Comparison
CP056805.1 See Comparison
NZ_CP145676.1 See Comparison
NZ_CP059007.1 See Comparison
NZ_CP043409.1 See Comparison
CP054452.1 See Comparison
NZ_CP120554.1 See Comparison
NZ_LR890613.1 See Comparison
CP048874.1 See Comparison
NZ_AP025750.1 See Comparison
NZ_CP116082.1 See Comparison
NZ_CP101229.1 See Comparison
NZ_CP101205.1 See Comparison
NC_017648.1 See Comparison
NZ_CP040268.1 See Comparison
NZ_CP023898.1 See Comparison
NZ_CP146568.1 See Comparison
NZ_CP146560.1 See Comparison
NZ_CP145676.1 See Comparison
NZ_LR890613.1 See Comparison
CP056805.1 See Comparison
NZ_CP059007.1 See Comparison
CP054452.1 See Comparison
NZ_CP043409.1 See Comparison
NZ_CP101229.1 See Comparison
NZ_CP116082.1 See Comparison
NZ_CP101205.1 See Comparison
NZ_CP120554.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2