Plasmid LR890623.1

Sequence

Nucleotide Information

Accession LR890623.1
Description Klebsiella pneumoniae isolate KSB2_1C-sc-2280352 genome assembly, plasmid: 4
Source insd
Topology circular
Length 3549 bp
GC Content 0.47 %
Created at NCBI Oct. 30, 2020



Biosample

Curated Collection Information
Accession 4106435

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Australia
Original Query Type name
Coordinates (Lat/Lon) -24.78/134.76
Address Australia

ECOSYSTEM
Original Query Homo sapiens,rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query healthy
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_LR890366.1 See Comparison
LR890732.1 See Comparison
LR890593.1 See Comparison
NZ_LC505603.1 See Comparison
NZ_CP115686.1 See Comparison
CP094901.1 See Comparison
NZ_CP030730.1 See Comparison
NZ_CP030738.1 See Comparison
NZ_CP030746.1 See Comparison
NZ_CP030723.1 See Comparison
NZ_CP084816.1 See Comparison
NZ_CP083782.1 See Comparison
NZ_CP115686.1 See Comparison
NZ_CP031821.1 See Comparison
LR890732.1 See Comparison
LR890593.1 See Comparison
NZ_LC505603.1 See Comparison
NZ_CP147640.1 See Comparison
NZ_CP147634.1 See Comparison
NZ_LR890366.1 See Comparison
NZ_CP084816.1 See Comparison
CP094901.1 See Comparison
NZ_CP030730.1 See Comparison
NZ_CP030738.1 See Comparison
NZ_CP030746.1 See Comparison
NZ_CP030723.1 See Comparison
NZ_CP031821.1 See Comparison
NZ_CP083782.1 See Comparison
NZ_LR890366.1 See Comparison
NZ_CP147640.1 See Comparison
NZ_CP147634.1 See Comparison
NZ_CP115686.1 See Comparison
LR890732.1 See Comparison
LR890593.1 See Comparison
NZ_LC505603.1 See Comparison
NZ_CP030730.1 See Comparison
NZ_CP030738.1 See Comparison
NZ_CP030746.1 See Comparison
NZ_CP030723.1 See Comparison
NZ_LR890366.1 See Comparison
NZ_CP031821.1 See Comparison
NZ_CP147640.1 See Comparison
NZ_CP147634.1 See Comparison
CP094901.1 See Comparison
NZ_CP084816.1 See Comparison
NZ_CP083782.1 See Comparison
NZ_CP115686.1 See Comparison
NZ_LC505603.1 See Comparison
LR890732.1 See Comparison
LR890593.1 See Comparison
NZ_CP147634.1 See Comparison
NZ_CP030730.1 See Comparison
NZ_CP030738.1 See Comparison
NZ_CP030746.1 See Comparison
NZ_CP030723.1 See Comparison
CP094901.1 See Comparison
NZ_CP084816.1 See Comparison
NZ_CP083782.1 See Comparison
NZ_CP031821.1 See Comparison
NZ_CP147640.1 See Comparison
LR890732.1 See Comparison
NZ_LR890366.1 See Comparison
LR890593.1 See Comparison
CP094901.1 See Comparison
NZ_CP115686.1 See Comparison
NZ_LC505603.1 See Comparison
NZ_CP030730.1 See Comparison
NZ_CP030738.1 See Comparison
NZ_CP030746.1 See Comparison
NZ_CP030723.1 See Comparison
NZ_LR890366.1 See Comparison
NZ_CP147640.1 See Comparison
NZ_CP147634.1 See Comparison
NZ_CP084816.1 See Comparison
NZ_CP083782.1 See Comparison
NZ_CP031821.1 See Comparison
NZ_CP031821.1 See Comparison
NZ_LC505603.1 See Comparison
NZ_CP115686.1 See Comparison
NZ_CP084816.1 See Comparison
LR890732.1 See Comparison
LR890623.1 See Comparison
LR890593.1 See Comparison
NZ_CP030730.1 See Comparison
NZ_CP030738.1 See Comparison
NZ_CP030746.1 See Comparison
NZ_CP030723.1 See Comparison
CP094901.1 See Comparison
NZ_CP083782.1 See Comparison
LR890732.1 See Comparison
NZ_LR890366.1 See Comparison
NZ_CP147640.1 See Comparison
NZ_CP147634.1 See Comparison
LR890593.1 See Comparison
NZ_LC505603.1 See Comparison
CP094901.1 See Comparison
NZ_CP115686.1 See Comparison
NZ_CP030730.1 See Comparison
NZ_CP030738.1 See Comparison
NZ_CP030746.1 See Comparison
NZ_CP030723.1 See Comparison
NZ_CP084816.1 See Comparison
NZ_CP083782.1 See Comparison
NZ_CP031821.1 See Comparison
NZ_CP147640.1 See Comparison
NZ_CP147634.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2