Plasmid LR134258.1
Sequence
Nucleotide Information
| Accession | LR134258.1 |
|---|---|
| Description | Klebsiella aerogenes strain NCTC9644 genome assembly, plasmid: 5 |
| Source | insd |
| Topology | circular |
| Length | 30387 bp |
| GC Content | 0.54 % |
| Created at NCBI | Dec. 19, 2018 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella aerogenes (548) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_aerogenes (548) |
| Strain |
Biosample
Curated Collection Information
| Accession | 4165406 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | None |
|---|---|
| Original Query Type | None |
| Coordinates (Lat/Lon) | |
| Address | None |
ECOSYSTEM
| Original Query | urine |
|---|---|
| Classification | host_associated,urinary_system |
| Host-associated Taxon |
DISEASE
| Original Query | not available: to be reported later |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | Phage terminase small subunit | copy | ||
| PGAG | terminase | copy | ||
| PGAG | phage terminase | copy | ||
| PGAG | Uncharacterised protein | copy | ||
| PGAG | HK97 family phage portal protein | copy | ||
| PGAG | HK97 family phage prohead protease | copy | ||
| PGAG | HK97 family phage major capsid protein | copy | ||
| PGAG | HK97 family phage major capsid protein | copy | ||
| PGAG | Uncharacterised protein | copy | ||
| PGAG | phage head-tail adaptor | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 36 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| No data available in table | |||||||||
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
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Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |