Plasmid LR134255.1
Sequence
Nucleotide Information
| Accession | LR134255.1 |
|---|---|
| Description | Klebsiella aerogenes strain NCTC9644 genome assembly, plasmid: 2 |
| Source | insd |
| Topology | circular |
| Length | 76530 bp |
| GC Content | 0.48 % |
| Created at NCBI | Dec. 19, 2018 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella aerogenes (548) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_aerogenes (548) |
| Strain |
Biosample
Curated Collection Information
| Accession | 4165406 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | None |
|---|---|
| Original Query Type | None |
| Coordinates (Lat/Lon) | |
| Address | None |
ECOSYSTEM
| Original Query | urine |
|---|---|
| Classification | host_associated,urinary_system |
| Host-associated Taxon |
DISEASE
| Original Query | not available: to be reported later |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | Uncharacterised protein | copy | ||
| PGAG | Uncharacterised protein | copy | ||
| PGAG | ymoA | copy | ||
| PGAG | Uncharacterised protein | copy | ||
| PGAG | Uncharacterised protein | copy | ||
| PGAG | Uncharacterised protein | copy | ||
| PGAG | Uncharacterised protein | copy | ||
| PGAG | Uncharacterised protein | copy | ||
| PGAG | Uncharacterised protein | copy | ||
| PGAG | Uncharacterised protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 87 entries
…
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000207__CP025517 | IncR | 6763 | 7627 | minus | 98.15 | 99 | 0 | 1509 |
| replicon | 000130__CP023489 | IncFII | 73076 | 73299 | minus | 95.133 | 96 | 1.28e-95 | 355 |
| replicon | CP017721_00179 | rep_cluster_2183 | 73308 | 74171 | plus | 83.121 | 100 | 0 | 787 |
| relaxase | CP045692_00039 | MOBF | 65685 | 69089 | plus | 97.274 | 99 | 0 | 2216 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |