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v. 2024_05_31_v2
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Similar Plasmids
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Antimicrobial Resistance Genes
Typing
Plasmid LC807796.1
Sequence
Nucleotide Information
Accession
LC807796.1
Description
Escherichia coli EC36 plasmid pEC36-NDM-5 DNA, complete sequence
Source
insd
Topology
circular
Length
101183 bp
GC Content
0.52 %
Created at NCBI
April 4, 2024
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Biosample
Curated Collection Information
Accession
35346202
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Bangladesh,Dhaka
Original Query Type
name
Coordinates (Lat/Lon)
23.76/90.38
Address
Bangladesh,Dhaka
ECOSYSTEM
Original Query
vegetable
Classification
food
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Similar Plasmids
based on Mash distance
NZ_OW967803.1
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NZ_OW967803.1
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NZ_CP123037.1
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NZ_AP023225.1
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LC613142.1
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NZ_OW967803.1
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NZ_CP123037.1
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NZ_AP023225.1
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LC613142.1
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NZ_CP123037.1
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NZ_CP123037.1
See Comparison
NZ_AP023225.1
See Comparison
LC613142.1
See Comparison
NZ_OW967803.1
See Comparison
NZ_AP023225.1
See Comparison
LC807796.1
See Comparison
NZ_CP123037.1
See Comparison
LC613142.1
See Comparison
NZ_OW967803.1
See Comparison
LC613142.1
See Comparison
NZ_AP023225.1
See Comparison
NZ_CP123037.1
See Comparison
NZ_OW967803.1
See Comparison
NZ_AP023225.1
See Comparison
LC613142.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore