Plasmid LC807793.1

Sequence

Nucleotide Information

Accession	LC807793.1
Description	Escherichia coli EC30 plasmid pEC30-NDM-5 DNA, complete sequence
Source	insd
Topology	circular
Length	137619 bp
GC Content	0.52 %
Created at NCBI	April 4, 2024

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Biosample

Curated Collection Information

Accession	35346199

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Bangladesh,Dhaka
Original Query Type	name
Coordinates (Lat/Lon)	23.76/90.38
Address	Bangladesh,Dhaka

ECOSYSTEM

Original Query	vegetable
Classification	food
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Similar Plasmids

based on Mash distance

NZ_CP103541.1	See Comparison
NZ_CP083867.1	See Comparison
NZ_CP083875.1	See Comparison
NZ_CP083881.1	See Comparison
NZ_CP083878.1	See Comparison
NZ_CP083867.1	See Comparison
LC807790.1	See Comparison
LC807785.1	See Comparison
NZ_CP103541.1	See Comparison
NZ_CP149846.1	See Comparison
CP114338.1	See Comparison
CP114348.1	See Comparison
NZ_CP083875.1	See Comparison
NZ_CP083881.1	See Comparison
NZ_CP083878.1	See Comparison
NZ_CP149846.1	See Comparison
NZ_CP149846.1	See Comparison
LC807790.1	See Comparison
LC807785.1	See Comparison
CP114338.1	See Comparison
CP114348.1	See Comparison
NZ_CP083867.1	See Comparison
NZ_CP083875.1	See Comparison
NZ_CP083881.1	See Comparison
NZ_CP083878.1	See Comparison
NZ_CP103541.1	See Comparison
NZ_CP103541.1	See Comparison
CP114338.1	See Comparison
CP114348.1	See Comparison
LC807790.1	See Comparison
LC807785.1	See Comparison
NZ_CP149846.1	See Comparison
NZ_CP083867.1	See Comparison
NZ_CP083875.1	See Comparison
NZ_CP083881.1	See Comparison
NZ_CP083878.1	See Comparison
CP114338.1	See Comparison
LC807790.1	See Comparison
LC807785.1	See Comparison
CP114348.1	See Comparison
NZ_CP103541.1	See Comparison
NZ_CP149846.1	See Comparison
NZ_CP083867.1	See Comparison
NZ_CP083875.1	See Comparison
NZ_CP083881.1	See Comparison
NZ_CP083878.1	See Comparison
NZ_CP103541.1	See Comparison
CP114338.1	See Comparison
CP114348.1	See Comparison
LC807790.1	See Comparison
LC807785.1	See Comparison
NZ_CP083867.1	See Comparison
NZ_CP083867.1	See Comparison
NZ_CP083875.1	See Comparison
NZ_CP083881.1	See Comparison
NZ_CP083878.1	See Comparison
NZ_CP149846.1	See Comparison
LC807793.1	See Comparison
LC807790.1	See Comparison
LC807785.1	See Comparison
CP114338.1	See Comparison
CP114348.1	See Comparison
NZ_CP103541.1	See Comparison
NZ_CP083875.1	See Comparison
NZ_CP083881.1	See Comparison
NZ_CP083878.1	See Comparison
NZ_CP149846.1	See Comparison
LC807790.1	See Comparison
LC807785.1	See Comparison
CP114338.1	See Comparison
CP114348.1	See Comparison

Identical Plasmids

100% Sequence Identity

LC807790.1

Sequence

Accession: LC807790.1
Description: Escherichia coli EC26 plasmid pEC26-NDM-5 DNA, complete sequence
Source: insd
Created at NCBI: April 4, 2024

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2