Plasmid CP114348.1

Sequence

Nucleotide Information

Accession CP114348.1
Description Escherichia coli strain 2022CK-00559 plasmid unnamed1, complete sequence
Source insd
Topology circular
Length 140367 bp
GC Content 0.52 %
Created at NCBI Dec. 14, 2022



Assembly

Genome Data Information

Accession GCA_025778775.2
Assembly Coverage 47


Biosample

Curated Collection Information
Accession 31390131

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Homo sapiens,Wound/Abscess
Classification abscess,host_associated,wound
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

LC807793.1 See Comparison
LC807790.1 See Comparison
CP114338.1 See Comparison
NZ_CP149846.1 See Comparison
NZ_CP083867.1 See Comparison
NZ_CP083875.1 See Comparison
NZ_CP083881.1 See Comparison
NZ_CP083878.1 See Comparison
NZ_CP149846.1 See Comparison
LC807793.1 See Comparison
LC807790.1 See Comparison
CP114338.1 See Comparison
NZ_CP103541.1 See Comparison
NZ_CP150018.1 See Comparison
CP114338.1 See Comparison
NZ_CP103541.1 See Comparison
NZ_CP083867.1 See Comparison
NZ_CP083875.1 See Comparison
NZ_CP083881.1 See Comparison
NZ_CP083878.1 See Comparison
NZ_CP150018.1 See Comparison
NZ_CP103541.1 See Comparison
NZ_CP150018.1 See Comparison
NZ_CP083867.1 See Comparison
NZ_CP083875.1 See Comparison
NZ_CP083881.1 See Comparison
NZ_CP083878.1 See Comparison
NZ_CP149846.1 See Comparison
LC807793.1 See Comparison
LC807790.1 See Comparison
LC807793.1 See Comparison
LC807790.1 See Comparison
NZ_CP083867.1 See Comparison
CP114338.1 See Comparison
NZ_CP103541.1 See Comparison
NZ_CP083875.1 See Comparison
NZ_CP083881.1 See Comparison
NZ_CP083878.1 See Comparison
NZ_CP150018.1 See Comparison
NZ_CP150018.1 See Comparison
CP114338.1 See Comparison
NZ_CP103541.1 See Comparison
NZ_CP083867.1 See Comparison
NZ_CP083875.1 See Comparison
NZ_CP083881.1 See Comparison
NZ_CP083878.1 See Comparison
NZ_CP149846.1 See Comparison
LC807793.1 See Comparison
LC807790.1 See Comparison
CP114338.1 See Comparison
NZ_CP149846.1 See Comparison
LC807793.1 See Comparison
LC807790.1 See Comparison
NZ_CP103541.1 See Comparison
NZ_CP083881.1 See Comparison
NZ_CP083878.1 See Comparison
NZ_CP149846.1 See Comparison
NZ_CP083867.1 See Comparison
NZ_CP083875.1 See Comparison
NZ_CP150018.1 See Comparison
CP114338.1 See Comparison
LC807793.1 See Comparison
LC807790.1 See Comparison
CP114348.1 See Comparison
NZ_CP150018.1 See Comparison
NZ_CP103541.1 See Comparison
NZ_CP083867.1 See Comparison
NZ_CP083875.1 See Comparison
NZ_CP083881.1 See Comparison
NZ_CP083878.1 See Comparison
NZ_CP149846.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2