Plasmid CP154286.1

Sequence

Nucleotide Information

Accession CP154286.1
Description Staphylococcus aureus strain BSN194 plasmid pSaBSN9, complete sequence
Source insd
Topology circular
Length 35655 bp
GC Content 0.30 %
Created at NCBI May 6, 2024



Assembly

Genome Data Information

Accession GCA_039522825.1
Assembly Coverage 94


Biosample

Curated Collection Information
Accession 38637774

PLASMID INFORMATION
Genotype ST8-MRSA-IVa CC8

GEOGRAPHICAL INFORMATION
Original Query 42.33N;83.05W
Original Query Type coordinates
Coordinates (Lat/Lon) 42.33/-83.05
Address Washington Boulevard, Detroit, Wayne County, Michigan, 48226, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 60
Host-associated Sex female

DISEASE
Original Query pneumonia,death
DOID/SYMP
  • Pneumonia (DOID:552 )
    • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP030569.1 See Comparison
CP030458.1 See Comparison
NZ_CP042349.1 See Comparison
NZ_CP042347.1 See Comparison
CP030569.1 See Comparison
CP051896.1 See Comparison
CP049514.1 See Comparison
NZ_CP113019.1 See Comparison
CP030458.1 See Comparison
CP051992.1 See Comparison
NZ_CP042349.1 See Comparison
NZ_CP042347.1 See Comparison
CP051992.1 See Comparison
CP051896.1 See Comparison
CP030569.1 See Comparison
CP049514.1 See Comparison
NZ_CP113019.1 See Comparison
CP030458.1 See Comparison
NZ_CP042349.1 See Comparison
NZ_CP042347.1 See Comparison
CP030569.1 See Comparison
CP051992.1 See Comparison
NZ_CP113019.1 See Comparison
CP051896.1 See Comparison
CP049514.1 See Comparison
NZ_CP042349.1 See Comparison
CP030458.1 See Comparison
NZ_CP042347.1 See Comparison
CP051992.1 See Comparison
CP030458.1 See Comparison
CP051896.1 See Comparison
CP049514.1 See Comparison
NZ_CP113019.1 See Comparison
CP030569.1 See Comparison
CP030569.1 See Comparison
NZ_CP042349.1 See Comparison
NZ_CP042347.1 See Comparison
CP051992.1 See Comparison
NZ_CP113019.1 See Comparison
CP030458.1 See Comparison
CP051992.1 See Comparison
CP030458.1 See Comparison
CP051896.1 See Comparison
CP049514.1 See Comparison
CP030569.1 See Comparison
NZ_CP042349.1 See Comparison
NZ_CP042347.1 See Comparison
CP051896.1 See Comparison
CP049514.1 See Comparison
NZ_CP113019.1 See Comparison
NZ_CP113019.1 See Comparison
CP154286.1 See Comparison
CP049514.1 See Comparison
NZ_CP042349.1 See Comparison
NZ_CP042347.1 See Comparison
CP051992.1 See Comparison
CP051896.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2