Plasmid CP051992.1
Sequence
Nucleotide Information
| Accession | CP051992.1 |
|---|---|
| Description | Staphylococcus aureus strain ER08597.3 plasmid pER08597.3A.1, complete sequence |
| Source | insd |
| Topology | circular |
| Length | 35665 bp |
| GC Content | 0.30 % |
| Created at NCBI | Sept. 24, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Staphylococcus aureus (1280) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Bacillota (1239) |
| Class | Bacilli (91061) |
| Order | Bacillales (1385) |
| Family | Staphylococcaceae (90964) |
| Genus | Staphylococcus (1279) |
| Species | Staphylococcus_aureus (1280) |
| Strain |
Biosample
Curated Collection Information
| Accession | 14669395 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 40.7903114N;73.9528738W |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 40.79/-73.95 |
| Address | Guggenheim Pavilion, 1190, 5th Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10029, United States |
ECOSYSTEM
| Original Query | Homo sapiens,blood |
|---|---|
| Classification | blood,circulatory_system,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | Bacteremia |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
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Greens
100
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B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | DUF1002 domain-containing protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | AP2 domain-containing protein | copy | ||
| PGAG | YolD-like family protein | copy | ||
| PGAG | translation initiation factor eIF-2B | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 40 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 002243__GQ900389_00041 | rep_cluster_765 | 32576 | 33670 | minus | 99.27 | 100 | 0 | 1978 |
| relaxase | NC_013325_00011 | MOBP | 16206 | 17354 | minus | 100 | 100 | 0 | 789 |
| mate-pair-formation | NC_013325_00006 | MPF_T | 20485 | 22473 | minus | 100 | 99 | 0 | 1361 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |