Plasmid CP110758.1

Sequence

Nucleotide Information

Accession	CP110758.1
Description	Klebsiella pneumoniae strain INF102 plasmid pINF102.7, complete sequence
Source	insd
Topology	circular
Length	124255 bp
GC Content	0.53 %
Created at NCBI	Nov. 21, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Klebsiella pneumoniae (573)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Klebsiella (570)
Species	Klebsiella_pneumoniae (573)
Strain

Assembly

Genome Data Information

Accession	GCA_026256425.1
Assembly Coverage	14

Biosample

Curated Collection Information

Accession	4042581

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Australia
Original Query Type	name
Coordinates (Lat/Lon)	-24.78/134.76
Address	Australia

ECOSYSTEM

Original Query	Homo sapiens,urine
Classification	host_associated,urinary_system
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	diseased
DOID/SYMP	Disease (DOID:4 ) A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

CP110758.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

Reds

Oranges

Greens

100

Hex

R

G

B

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	merT		copy
amrfinderplus	merE		copy
PGAG	IS110 family transposase		copy
PGAG	IS5 family transposase		copy
PGAG	acetoin reductase		copy
PGAG	NAD-dependent succinate-semialdehyde dehydrogenase		copy
PGAG	NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta		copy
PGAG	NAD(P) transhydrogenase subunit alpha		copy
PGAG	NAD(P) transhydrogenase subunit alpha		copy
PGAG	TetR/AcrR family transcriptional regulator		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 128 entries

…

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Loading...
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Loading...
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

Loading...
NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

mate-pair-formation	NC_011092_00103	MPF_T	72651	73541	minus	100	100	0	575
mate-pair-formation	NC_011092_00102	MPF_T	73537	74220	minus	100	100	3.09e-132	417
mate-pair-formation	NC_011092_00100	MPF_T	74433	75437	minus	100	100	1.31e-166	521
relaxase	NC_014725_00039	MOBC	62999	63742	minus	99.597	100	4.310000000000001e-163	506
replicon	000204__CP008701_00115	IncR	49496	50391	plus	98.996	100	0	1604
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 5 of 5 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

Loading...
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2