Plasmid CP088819.1

Sequence

Nucleotide Information

Accession	CP088819.1
Description	Escherichia coli strain B16EC0214 plasmid pB16EC0214-1, complete sequence
Source	insd
Topology	circular
Length	146716 bp
GC Content	0.52 %
Created at NCBI	Dec. 9, 2021

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_021133195.1
Assembly Coverage	183

Biosample

Curated Collection Information

Accession	23391556

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	37.68N;126.77E
Original Query Type	coordinates
Coordinates (Lat/Lon)	37.68/126.77
Address	Gyeongui-ro, Daehwa-dong, 일산3동, Ilsanseo-gu, Goyang-si, 10374, South Korea

ECOSYSTEM

Original Query	Homo sapiens,blood
Classification	blood,circulatory_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	Bloodstream infection
DOID/SYMP	Disease infectious agent (DOID:0050117 ) A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

Similar Plasmids

based on Mash distance

NZ_CP124509.1	See Comparison
NZ_CP097361.1	See Comparison
CP088827.1	See Comparison
CP088803.1	See Comparison
NZ_CP115391.1	See Comparison
NZ_CP124507.1	See Comparison
NZ_CP124346.1	See Comparison
NZ_CP124325.1	See Comparison
NZ_CP124344.1	See Comparison
NZ_CP124360.1	See Comparison
NZ_CP124340.1	See Comparison
NZ_CP124342.1	See Comparison
NZ_CP124358.1	See Comparison
NZ_CP124348.1	See Comparison
NZ_CP124338.1	See Comparison
NZ_CP124327.1	See Comparison
NZ_CP124323.1	See Comparison
CP088827.1	See Comparison
CP088803.1	See Comparison
CP088796.1	See Comparison
CP088834.1	See Comparison
CP088633.1	See Comparison
CP088579.1	See Comparison
CP088462.1	See Comparison
CP088434.1	See Comparison
CP088409.1	See Comparison
CP088796.1	See Comparison
CP088834.1	See Comparison
CP088633.1	See Comparison
CP088579.1	See Comparison
CP088462.1	See Comparison
CP088434.1	See Comparison
CP088409.1	See Comparison
NZ_CP124509.1	See Comparison
NZ_CP124503.1	See Comparison
NZ_CP124514.1	See Comparison
NZ_CP124516.1	See Comparison
NZ_CP097361.1	See Comparison
NZ_CP115391.1	See Comparison
NZ_CP124503.1	See Comparison
NZ_CP124514.1	See Comparison
NZ_CP124516.1	See Comparison
NZ_CP124507.1	See Comparison
NZ_CP124346.1	See Comparison
NZ_CP124325.1	See Comparison
NZ_CP124344.1	See Comparison
NZ_CP124360.1	See Comparison
NZ_CP124340.1	See Comparison
NZ_CP124342.1	See Comparison
NZ_CP124358.1	See Comparison
NZ_CP124348.1	See Comparison
NZ_CP124338.1	See Comparison
NZ_CP124327.1	See Comparison
NZ_CP124323.1	See Comparison
NZ_CP097361.1	See Comparison
CP088462.1	See Comparison
CP088434.1	See Comparison
CP088409.1	See Comparison
NZ_CP124507.1	See Comparison
CP088827.1	See Comparison
CP088803.1	See Comparison
CP088796.1	See Comparison
CP088834.1	See Comparison
CP088633.1	See Comparison
CP088579.1	See Comparison
NZ_CP115391.1	See Comparison
NZ_CP124509.1	See Comparison
NZ_CP124503.1	See Comparison
NZ_CP124514.1	See Comparison
NZ_CP124516.1	See Comparison
NZ_CP124346.1	See Comparison
NZ_CP124325.1	See Comparison
NZ_CP124344.1	See Comparison
NZ_CP124360.1	See Comparison
NZ_CP124340.1	See Comparison
NZ_CP124342.1	See Comparison
NZ_CP124358.1	See Comparison
NZ_CP124348.1	See Comparison
NZ_CP124338.1	See Comparison
NZ_CP124327.1	See Comparison
NZ_CP124323.1	See Comparison
NZ_CP097361.1	See Comparison
NZ_CP097361.1	See Comparison
NZ_CP115391.1	See Comparison
NZ_CP124516.1	See Comparison
NZ_CP124346.1	See Comparison
NZ_CP124325.1	See Comparison
NZ_CP124344.1	See Comparison
NZ_CP124360.1	See Comparison
NZ_CP124340.1	See Comparison
NZ_CP124342.1	See Comparison
NZ_CP124358.1	See Comparison
NZ_CP124348.1	See Comparison
NZ_CP124338.1	See Comparison
NZ_CP124327.1	See Comparison
NZ_CP124323.1	See Comparison
CP088819.1	See Comparison
CP088827.1	See Comparison
CP088803.1	See Comparison
CP088796.1	See Comparison
CP088834.1	See Comparison
CP088633.1	See Comparison
CP088579.1	See Comparison
CP088462.1	See Comparison
CP088434.1	See Comparison
CP088409.1	See Comparison
NZ_CP124507.1	See Comparison
NZ_CP124509.1	See Comparison
NZ_CP124503.1	See Comparison
NZ_CP124514.1	See Comparison
NZ_CP115391.1	See Comparison
CP088827.1	See Comparison
CP088803.1	See Comparison
CP088796.1	See Comparison
CP088834.1	See Comparison
CP088633.1	See Comparison
CP088579.1	See Comparison
CP088462.1	See Comparison
CP088434.1	See Comparison
CP088409.1	See Comparison
NZ_CP124516.1	See Comparison
NZ_CP124346.1	See Comparison
NZ_CP124507.1	See Comparison
NZ_CP124509.1	See Comparison
NZ_CP124503.1	See Comparison
NZ_CP124514.1	See Comparison
NZ_CP124325.1	See Comparison
NZ_CP124344.1	See Comparison
NZ_CP124360.1	See Comparison
NZ_CP124340.1	See Comparison
NZ_CP124342.1	See Comparison
NZ_CP124358.1	See Comparison
NZ_CP124348.1	See Comparison
NZ_CP124338.1	See Comparison
NZ_CP124327.1	See Comparison
NZ_CP124323.1	See Comparison
NZ_CP115391.1	See Comparison
CP088827.1	See Comparison
CP088803.1	See Comparison
CP088796.1	See Comparison
CP088834.1	See Comparison
CP088633.1	See Comparison
CP088579.1	See Comparison
CP088462.1	See Comparison
CP088434.1	See Comparison
CP088409.1	See Comparison
NZ_CP097361.1	See Comparison
NZ_CP124507.1	See Comparison
NZ_CP124509.1	See Comparison
NZ_CP124503.1	See Comparison
NZ_CP124514.1	See Comparison
NZ_CP124516.1	See Comparison
NZ_CP124346.1	See Comparison
NZ_CP124325.1	See Comparison
NZ_CP124344.1	See Comparison
NZ_CP124360.1	See Comparison
NZ_CP124340.1	See Comparison
NZ_CP124342.1	See Comparison
NZ_CP124358.1	See Comparison
NZ_CP124348.1	See Comparison
NZ_CP124338.1	See Comparison
NZ_CP124327.1	See Comparison
NZ_CP124323.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore