Plasmid CP088633.1

Sequence

Nucleotide Information

Accession CP088633.1
Description Escherichia coli strain C17EC0063 plasmid pC17EC0063-1, complete sequence
Source insd
Topology circular
Length 146310 bp
GC Content 0.52 %
Created at NCBI Dec. 9, 2021



Assembly

Genome Data Information

Accession GCF_021132135.1
Assembly Coverage 440


Biosample

Curated Collection Information
Accession 23391613

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.34N;127.92E
Original Query Type coordinates
Coordinates (Lat/Lon) 37.34/127.92
Address 원주시청(백운아트홀), 65, Mandae-ro, Wonju-si, Gangwon State, 26387, South Korea

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP088819.1 See Comparison
CP088827.1 See Comparison
CP088803.1 See Comparison
CP088796.1 See Comparison
CP088834.1 See Comparison
CP088579.1 See Comparison
CP088462.1 See Comparison
CP088434.1 See Comparison
CP088409.1 See Comparison
NZ_CP115391.1 See Comparison
CP088819.1 See Comparison
NZ_CP124507.1 See Comparison
NZ_CP124509.1 See Comparison
NZ_CP124503.1 See Comparison
NZ_CP124514.1 See Comparison
NZ_CP124516.1 See Comparison
NZ_CP124346.1 See Comparison
NZ_CP124325.1 See Comparison
NZ_CP124344.1 See Comparison
NZ_CP124360.1 See Comparison
NZ_CP124340.1 See Comparison
NZ_CP124342.1 See Comparison
NZ_CP124358.1 See Comparison
NZ_CP124348.1 See Comparison
NZ_CP124338.1 See Comparison
NZ_CP124327.1 See Comparison
NZ_CP124323.1 See Comparison
NZ_CP097361.1 See Comparison
CP088827.1 See Comparison
CP088803.1 See Comparison
CP088796.1 See Comparison
CP088834.1 See Comparison
CP088633.1 See Comparison
CP088579.1 See Comparison
CP088462.1 See Comparison
CP088434.1 See Comparison
CP088409.1 See Comparison
NZ_CP124509.1 See Comparison
NZ_CP115391.1 See Comparison
NZ_CP124503.1 See Comparison
NZ_CP124514.1 See Comparison
NZ_CP124516.1 See Comparison
NZ_CP124346.1 See Comparison
NZ_CP124507.1 See Comparison
NZ_CP124325.1 See Comparison
NZ_CP124344.1 See Comparison
NZ_CP124360.1 See Comparison
NZ_CP124340.1 See Comparison
NZ_CP124342.1 See Comparison
NZ_CP124358.1 See Comparison
NZ_CP124348.1 See Comparison
NZ_CP124338.1 See Comparison
NZ_CP124327.1 See Comparison
NZ_CP124323.1 See Comparison
CP088819.1 See Comparison
CP088579.1 See Comparison
CP088462.1 See Comparison
CP088434.1 See Comparison
CP088409.1 See Comparison
NZ_CP115391.1 See Comparison
NZ_CP124507.1 See Comparison
NZ_CP097361.1 See Comparison
CP088819.1 See Comparison
CP088827.1 See Comparison
CP088803.1 See Comparison
CP088796.1 See Comparison
CP088834.1 See Comparison
NZ_CP124509.1 See Comparison
NZ_CP124503.1 See Comparison
NZ_CP124514.1 See Comparison
NZ_CP124516.1 See Comparison
NZ_CP124346.1 See Comparison
NZ_CP124325.1 See Comparison
NZ_CP124344.1 See Comparison
NZ_CP124360.1 See Comparison
NZ_CP124340.1 See Comparison
NZ_CP124342.1 See Comparison
NZ_CP124358.1 See Comparison
NZ_CP124348.1 See Comparison
NZ_CP124338.1 See Comparison
NZ_CP124327.1 See Comparison
NZ_CP124323.1 See Comparison
NZ_CP097361.1 See Comparison
CP088434.1 See Comparison
CP088409.1 See Comparison
CP088827.1 See Comparison
CP088803.1 See Comparison
CP088796.1 See Comparison
CP088834.1 See Comparison
CP088579.1 See Comparison
CP088462.1 See Comparison
NZ_CP124507.1 See Comparison
NZ_CP115391.1 See Comparison
NZ_CP124509.1 See Comparison
NZ_CP124509.1 See Comparison
NZ_CP124503.1 See Comparison
NZ_CP124514.1 See Comparison
NZ_CP124516.1 See Comparison
NZ_CP097361.1 See Comparison
NZ_CP124346.1 See Comparison
NZ_CP124325.1 See Comparison
NZ_CP124344.1 See Comparison
NZ_CP124360.1 See Comparison
NZ_CP124340.1 See Comparison
NZ_CP124342.1 See Comparison
NZ_CP124358.1 See Comparison
NZ_CP124348.1 See Comparison
NZ_CP124338.1 See Comparison
NZ_CP124327.1 See Comparison
NZ_CP124323.1 See Comparison
CP088819.1 See Comparison
CP088827.1 See Comparison
CP088803.1 See Comparison
CP088796.1 See Comparison
CP088834.1 See Comparison
CP088579.1 See Comparison
CP088462.1 See Comparison
CP088434.1 See Comparison
CP088409.1 See Comparison
NZ_CP115391.1 See Comparison
NZ_CP124507.1 See Comparison
NZ_CP124503.1 See Comparison
NZ_CP124514.1 See Comparison
NZ_CP124516.1 See Comparison
NZ_CP124360.1 See Comparison
NZ_CP124340.1 See Comparison
NZ_CP124342.1 See Comparison
NZ_CP124358.1 See Comparison
NZ_CP124348.1 See Comparison
NZ_CP124338.1 See Comparison
NZ_CP124327.1 See Comparison
NZ_CP124323.1 See Comparison
CP088819.1 See Comparison
NZ_CP124346.1 See Comparison
NZ_CP124325.1 See Comparison
NZ_CP124344.1 See Comparison
NZ_CP097361.1 See Comparison
CP088827.1 See Comparison
CP088803.1 See Comparison
CP088796.1 See Comparison
CP088834.1 See Comparison
CP088579.1 See Comparison
CP088462.1 See Comparison
CP088434.1 See Comparison
CP088409.1 See Comparison
NZ_CP115391.1 See Comparison
NZ_CP124509.1 See Comparison
NZ_CP124507.1 See Comparison
NZ_CP124503.1 See Comparison
NZ_CP124514.1 See Comparison
NZ_CP124516.1 See Comparison
NZ_CP124338.1 See Comparison
NZ_CP124346.1 See Comparison
NZ_CP124325.1 See Comparison
NZ_CP124344.1 See Comparison
NZ_CP124360.1 See Comparison
NZ_CP124340.1 See Comparison
NZ_CP124342.1 See Comparison
NZ_CP124358.1 See Comparison
NZ_CP124348.1 See Comparison
NZ_CP124327.1 See Comparison
NZ_CP124323.1 See Comparison
NZ_CP097361.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore