Plasmid CP082744.1

Sequence

Nucleotide Information

Accession CP082744.1
Description Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N16S070 plasmid pN16S070-4, complete sequence
Source insd
Topology circular
Length 4633 bp
GC Content 0.50 %
Created at NCBI Aug. 31, 2021



Assembly

Genome Data Information

Accession GCA_010612865.2
Assembly Coverage 671


Biosample

Curated Collection Information
Accession 8113949

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,NM
Original Query Type name
Coordinates (Lat/Lon) 34.57/-105.99
Address USA,NM

ECOSYSTEM
Original Query chicken breast
Classification host_associated,mamary
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP088144.1 See Comparison
CP093087.1 See Comparison
CP093075.1 See Comparison
CP093124.1 See Comparison
CP093111.1 See Comparison
NZ_CP084219.1 See Comparison
CP082541.1 See Comparison
CP016040.1 See Comparison
NZ_AP027660.1 See Comparison
NZ_AP027583.1 See Comparison
NZ_CP124524.1 See Comparison
CP082541.1 See Comparison
NZ_CP069831.1 See Comparison
NZ_CP104364.1 See Comparison
NZ_CP104360.1 See Comparison
CP093087.1 See Comparison
CP093075.1 See Comparison
NZ_CP084219.1 See Comparison
NZ_CP140419.1 See Comparison
NZ_CP088144.1 See Comparison
CP093124.1 See Comparison
CP093111.1 See Comparison
NZ_AP027660.1 See Comparison
NZ_CP124524.1 See Comparison
CP016040.1 See Comparison
NZ_CP088144.1 See Comparison
NZ_AP027583.1 See Comparison
NZ_CP140419.1 See Comparison
NZ_CP104364.1 See Comparison
NZ_CP104360.1 See Comparison
NZ_CP069831.1 See Comparison
CP093087.1 See Comparison
CP093087.1 See Comparison
CP093075.1 See Comparison
NZ_CP084219.1 See Comparison
CP016040.1 See Comparison
NZ_AP027660.1 See Comparison
NZ_AP027583.1 See Comparison
NZ_CP104364.1 See Comparison
NZ_CP104360.1 See Comparison
NZ_CP088144.1 See Comparison
CP093124.1 See Comparison
CP093111.1 See Comparison
CP082541.1 See Comparison
NZ_CP124524.1 See Comparison
NZ_CP140419.1 See Comparison
NZ_CP069831.1 See Comparison
CP093075.1 See Comparison
CP093124.1 See Comparison
CP093111.1 See Comparison
NZ_CP084219.1 See Comparison
CP082541.1 See Comparison
NZ_AP027660.1 See Comparison
CP082744.1 See Comparison
NZ_CP124524.1 See Comparison
CP016040.1 See Comparison
NZ_AP027583.1 See Comparison
NZ_CP140419.1 See Comparison
NZ_CP069831.1 See Comparison
NZ_CP088144.1 See Comparison
NZ_CP104364.1 See Comparison
NZ_CP104360.1 See Comparison
CP093087.1 See Comparison
CP093075.1 See Comparison
CP093124.1 See Comparison
CP093111.1 See Comparison
NZ_CP088144.1 See Comparison
NZ_CP084219.1 See Comparison
NZ_CP104364.1 See Comparison
NZ_CP104360.1 See Comparison
CP082541.1 See Comparison
CP016040.1 See Comparison
NZ_CP124524.1 See Comparison
NZ_AP027660.1 See Comparison
NZ_AP027583.1 See Comparison
NZ_CP140419.1 See Comparison
NZ_CP069831.1 See Comparison
CP093087.1 See Comparison
CP093075.1 See Comparison
NZ_CP124524.1 See Comparison
NZ_CP084219.1 See Comparison
CP093124.1 See Comparison
CP093111.1 See Comparison
CP082541.1 See Comparison
CP016040.1 See Comparison
NZ_CP088144.1 See Comparison
NZ_AP027660.1 See Comparison
NZ_AP027583.1 See Comparison
NZ_CP140419.1 See Comparison
NZ_CP104364.1 See Comparison
NZ_CP104360.1 See Comparison
NZ_CP069831.1 See Comparison
CP082541.1 See Comparison
NZ_CP124524.1 See Comparison
NZ_CP140419.1 See Comparison
CP093087.1 See Comparison
CP093075.1 See Comparison
CP093124.1 See Comparison
CP093111.1 See Comparison
NZ_CP084219.1 See Comparison
CP016040.1 See Comparison
NZ_AP027660.1 See Comparison
NZ_AP027583.1 See Comparison
NZ_CP069831.1 See Comparison
NZ_CP104364.1 See Comparison
NZ_CP104360.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2