Plasmid CP082578.1

Sequence

Nucleotide Information

Accession CP082578.1
Description Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N18S0981 plasmid pN18S0981-1, complete sequence
Source insd
Topology circular
Length 31254 bp
GC Content 0.41 %
Created at NCBI Aug. 30, 2021



Assembly

Genome Data Information

Accession GCA_007861645.2
Assembly Coverage 325


Biosample

Curated Collection Information
Accession 12360091

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,PA
Original Query Type name
Coordinates (Lat/Lon) 40.97/-77.73
Address USA,PA

ECOSYSTEM
Original Query Chicken Breasts
Classification host_associated,mamary
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore