Plasmid CP082576.1
Sequence
Nucleotide Information
| Accession | CP082576.1 |
|---|---|
| Description | Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N18S0981 plasmid pN18S0981-2, complete sequence |
| Source | insd |
| Topology | circular |
| Length | 4674 bp |
| GC Content | 0.53 % |
| Created at NCBI | Aug. 30, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Salmonella enterica (90371) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_enterica (28901) |
| Strain |
Biosample
Curated Collection Information
| Accession | 12360091 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | USA,PA |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 40.97/-77.73 |
| Address | USA,PA |
ECOSYSTEM
| Original Query | Chicken Breasts |
|---|---|
| Classification | host_associated,mamary |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
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Oranges
Greens
100
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B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | hypothetical protein | copy | ||
| PGAG | type II toxin-antitoxin system RelE/ParE family toxin | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | MbeD family mobilization/exclusion protein | copy | ||
| PGAG | MbeB family mobilization protein | copy | ||
| PGAG | MobC family plasmid mobilization relaxosome protein | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | MOB_unknown | copy | ||
| MOB-typer | ColRNAI_rep_cluster_1987 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 10 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | CP016722 | MOB_unknown | 4070 | 4250 | minus | 86.813 | 83 | 1.62e-49 | 202 |
| relaxase | NC_013090_00004 | MOBP | 2152 | 3648 | minus | 92.385 | 100 | 0 | 897 |
| replicon | CP041116_00002 | ColRNAI_rep_cluster_1987 | 4229 | 4674 | plus | 90.646 | 85 | 2.75e-165 | 588 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |