Plasmid CP068399.1

Sequence

Nucleotide Information

Accession	CP068399.1
Description	Serratia marcescens strain MRSN696556 plasmid unnamed4, complete sequence
Source	insd
Topology	circular
Length	59223 bp
GC Content	0.50 %
Created at NCBI	Feb. 25, 2021

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Serratia marcescens (615)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Yersiniaceae (1903411)
Genus	Serratia (613)
Species	Serratia_marcescens (615)
Strain

Biosample

Curated Collection Information

Accession	17317342

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	29.46N;98.41W
Original Query Type	coordinates
Coordinates (Lat/Lon)	29.46/-98.41
Address	4241, Interstate 35 North, San Antonio, Bexar County, Texas, 78218, United States

ECOSYSTEM

Original Query	Homo sapiens,blood
Classification	blood,circulatory_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	bacteremia
DOID/SYMP	Bacterial infectious disease (DOID:104 ) A disease by infectious agent that results_in infection, has_material_basis_in Bacteria. Has_material_basis_in: ['bacteria']

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

CP068399.1	See Comparison

Plasmid Visualization

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100

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Search:

Source	Element Name	Display	Sequence	Favorite

PGAG	hypothetical protein		copy
PGAG	plasmid replication protein		copy
PGAG	hypothetical protein		copy
PGAG	hypothetical protein		copy
PGAG	phosphoadenosine phosphosulfate reductase family protein		copy
PGAG	hypothetical protein		copy
PGAG	hypothetical protein		copy
PGAG	hypothetical protein		copy
PGAG	hypothetical protein		copy
PGAG	hypothetical protein		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 88 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

oriT	JQ319772	MOBH	56855	57252	plus	100	100	0	736
replicon	000092__CP025470	IncC	1	1101	plus	100	100	0	2034
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 2 of 2 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2