Plasmid CP068398.1

Sequence

Nucleotide Information

Accession CP068398.1
Description Serratia marcescens strain MRSN696556 plasmid unnamed3, complete sequence
Source insd
Topology circular
Length 62414 bp
GC Content 0.47 %
Created at NCBI Feb. 25, 2021



Biosample

Curated Collection Information
Accession 17317342

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 29.46N;98.41W
Original Query Type coordinates
Coordinates (Lat/Lon) 29.46/-98.41
Address 4241, Interstate 35 North, San Antonio, Bexar County, Texas, 78218, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP068398.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGDnaJ domain-containing proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGDNA distortion polypeptide 1copy
PGAGrelaxase/mobilization nuclease domain-containing proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 72 entries
…



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_023277_00163MPF_T76989653plus89.26410001204
mate-pair-formationNC_019157_00029MPF_T1197613028plus92.8771000614
mate-pair-formationNC_019157_00030MPF_T1322613951plus97.9341002.68e-142446
mate-pair-formationNC_019083_00030MPF_T1396014886plus99.0291000632
mate-pair-formationNC_017624_00009MPF_T1713418930plus95.3269801125
replicon000221__NC_025130_00012IncX36037361245minus98.05310001519
relaxaseNC_020552_00059MOBP39085065plus98.4461000750
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 7 of 7 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2