Plasmid CP067594.1
Sequence
Nucleotide Information
| Accession | CP067594.1 |
|---|---|
| Description | Klebsiella pneumoniae strain ARLG-4870 plasmid pC601_2, complete sequence |
| Source | insd |
| Topology | circular |
| Length | 118543 bp |
| GC Content | 0.53 % |
| Created at NCBI | March 1, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 15869042 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | USA,South |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 33.31/-118.34 |
| Address | USA,South |
ECOSYSTEM
| Original Query | Homo sapiens,respiratory |
|---|---|
| Classification | host_associated,respiratory_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| rgi | ANT(3'')-II-AAC(6')-IId bifunctional protein | copy | ||
| rgi | TEM-10 | copy | ||
| PGAG | tap | copy | ||
| PGAG | replication initiation protein | copy | ||
| PGAG | peptidase | copy | ||
| PGAG | IS91 family transposase | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | DUF262 domain-containing protein | copy | ||
| PGAG | DUF262 domain-containing protein | copy | ||
| PGAG | DUF4011 domain-containing protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 138 entries
…
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||||
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000759__NC_013950_00034 | rep_cluster_1418 | 37569 | 38444 | minus | 99.315 | 100 | 0 | 1585 |
| replicon | 000129__CP018340 | IncFII | 118305 | 118539 | minus | 88.559 | 100 | 1.6999999999999998e-74 | 285 |
| mate-pair-formation | NC_014312_00116 | MPF_F | 83935 | 84237 | plus | 96.04 | 100 | 1.6500000000000001e-59 | 202 |
| mate-pair-formation | NC_014312_00118 | MPF_F | 84813 | 85550 | plus | 91.87 | 100 | 6.689999999999999e-147 | 460 |
| mate-pair-formation | NC_023332_00154 | MPF_F | 85553 | 86971 | plus | 89.03 | 100 | 0 | 732 |
| mate-pair-formation | NC_021502_00131 | MPF_T | 90737 | 93199 | plus | 97.442 | 100 | 0 | 1649 |
| mate-pair-formation | NC_014312_00128 | MPF_F | 93757 | 94374 | plus | 98.544 | 98 | 1.88e-120 | 382 |
| mate-pair-formation | NC_022609_00081 | MPF_F | 94394 | 95383 | plus | 99.697 | 100 | 0 | 685 |
| mate-pair-formation | NC_019389_00080 | MPF_F | 95399 | 96034 | plus | 98.113 | 100 | 9.41e-137 | 429 |
| mate-pair-formation | NC_021654_00016 | MPF_F | 96087 | 98048 | plus | 94.037 | 98 | 0 | 1187 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 14 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |