Plasmid CP063592.1

Sequence

Nucleotide Information

Accession CP063592.1
Description Enterococcus faecium strain BMT-2-1-1 plasmid pSS-1-1_06, complete sequence
Source insd
Topology circular
Length 4305 bp
GC Content 0.37 %
Created at NCBI April 4, 2022



Assembly

Genome Data Information

Accession GCA_022811285.1
Assembly Coverage 705.1


Biosample

Curated Collection Information

Accession 16483159

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 53.33N;10.1E
Original Query Type coordinates
Coordinates (Lat/Lon) 53.33/10.10
Address Zum Woldberg, Winsen (Luhe), Harburg, Lower Saxony, 21423, Germany

ECOSYSTEM
Original Query Homo sapiens,rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query bone marrow transplant
DOID/SYMP
  • Bone marrow disease (DOID:4961 )
  • A hematopoietic system disease that is located_in the bone marrow.

Visualization


Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP063561.1 See Comparison
NZ_LR135285.1 See Comparison
NZ_CP066634.1 See Comparison
NZ_LR135453.1 See Comparison
NZ_CP066590.1 See Comparison
NZ_CP066449.1 See Comparison
NZ_CP066441.1 See Comparison
NZ_CP066432.1 See Comparison
NZ_CP066627.1 See Comparison
NZ_CP066619.1 See Comparison
NZ_CP066679.1 See Comparison
NZ_CP066612.1 See Comparison
CP063561.1 See Comparison
NZ_LR135453.1 See Comparison
NZ_LR135285.1 See Comparison
NZ_CP066634.1 See Comparison
NZ_CP066590.1 See Comparison
NZ_CP066627.1 See Comparison
NZ_CP066619.1 See Comparison
NZ_CP066679.1 See Comparison
NZ_CP066612.1 See Comparison
NZ_CP066449.1 See Comparison
NZ_CP066441.1 See Comparison
NZ_CP066432.1 See Comparison
CP063592.1 See Comparison
CP063561.1 See Comparison
NZ_LR135453.1 See Comparison
NZ_LR135285.1 See Comparison
CP063561.1 See Comparison
NZ_CP066634.1 See Comparison
NZ_CP066590.1 See Comparison
NZ_CP066627.1 See Comparison
NZ_CP066619.1 See Comparison
NZ_CP066679.1 See Comparison
NZ_CP066612.1 See Comparison
NZ_CP066449.1 See Comparison
NZ_CP066441.1 See Comparison
NZ_CP066432.1 See Comparison
NZ_LR135453.1 See Comparison
NZ_LR135285.1 See Comparison
NZ_LR135285.1 See Comparison
NZ_CP066634.1 See Comparison
NZ_CP066590.1 See Comparison
NZ_CP066627.1 See Comparison
NZ_CP066619.1 See Comparison
NZ_CP066679.1 See Comparison
NZ_CP066612.1 See Comparison
NZ_CP066449.1 See Comparison
NZ_CP066441.1 See Comparison
NZ_CP066432.1 See Comparison
CP063561.1 See Comparison
NZ_LR135285.1 See Comparison
NZ_CP066634.1 See Comparison
NZ_CP066590.1 See Comparison
NZ_CP066627.1 See Comparison
NZ_CP066619.1 See Comparison
NZ_CP066679.1 See Comparison
NZ_CP066612.1 See Comparison
NZ_CP066449.1 See Comparison
NZ_CP066441.1 See Comparison
NZ_CP066432.1 See Comparison
CP063561.1 See Comparison
NZ_LR135453.1 See Comparison
NZ_LR135453.1 See Comparison
NZ_CP066634.1 See Comparison
NZ_CP066590.1 See Comparison
NZ_CP066627.1 See Comparison
NZ_CP066619.1 See Comparison
NZ_CP066679.1 See Comparison
NZ_CP066612.1 See Comparison
NZ_CP066449.1 See Comparison
NZ_CP066441.1 See Comparison
NZ_CP066432.1 See Comparison


Plasmid Visualization


SourceElement Name Display Sequence Favorite
PGAGplasmid recombination proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGprotein repcopy
MOB-typerMOBVcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 6 of 6 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_017023_00004MOBV451448minus99.3591000918
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 1 of 1 entry