Plasmid CP063592.1
Sequence
Nucleotide Information
Accession | CP063592.1 |
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Description | Enterococcus faecium strain BMT-2-1-1 plasmid pSS-1-1_06, complete sequence |
Source | insd |
Topology | circular |
Length | 4305 bp |
GC Content | 0.37 % |
Created at NCBI | April 4, 2022 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Enterococcus faecium (1352) |
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Lineage
Superkingdom | Bacteria (2) |
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Phylum | Bacillota (1239) |
Class | Bacilli (91061) |
Order | Lactobacillales (186826) |
Family | Enterococcaceae (81852) |
Genus | Enterococcus (1350) |
Species | Enterococcus_faecium (1352) |
Strain |
Biosample
Curated Collection Information
Accession | 16483159 |
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PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | 53.33N;10.1E |
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Original Query Type | coordinates |
Coordinates (Lat/Lon) | 53.33/10.10 |
Address | Zum Woldberg, Winsen (Luhe), Harburg, Lower Saxony, 21423, Germany |
ECOSYSTEM
Original Query | Homo sapiens,rectal swab |
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Classification | gastrointestinal_system,host_associated,rectal |
Host-associated Taxon |
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DISEASE
Original Query | bone marrow transplant |
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DOID/SYMP |
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Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
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B
Source | Element Name | Display | Sequence | Favorite |
---|---|---|---|---|
PGAG | plasmid recombination protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | protein rep | copy | ||
MOB-typer | MOBV | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 6 of 6 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
relaxase | NC_017023_00004 | MOBV | 45 | 1448 | minus | 99.359 | 100 | 0 | 918 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 1 of 1 entry