Plasmid CP063561.1

Sequence

Nucleotide Information

Accession CP063561.1
Description Enterococcus faecium strain BMT-1-1-10 plasmid pIN-1-10_06, complete sequence
Source insd
Topology circular
Length 4305 bp
GC Content 0.37 %
Created at NCBI April 4, 2022



Assembly

Genome Data Information

Accession GCA_022811185.1
Assembly Coverage 510


Biosample

Curated Collection Information
Accession 16483164

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 53.33N;10.1E
Original Query Type coordinates
Coordinates (Lat/Lon) 53.33/10.10
Address Zum Woldberg, Winsen (Luhe), Harburg, Lower Saxony, 21423, Germany

ECOSYSTEM
Original Query Homo sapiens,rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query bone marrow transplant
DOID/SYMP
  • Bone marrow disease (DOID:4961 )
    • A hematopoietic system disease that is located_in the bone marrow.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP063592.1 See Comparison
NZ_LR135285.1 See Comparison
NZ_CP066634.1 See Comparison
NZ_LR135453.1 See Comparison
NZ_CP066590.1 See Comparison
NZ_CP066627.1 See Comparison
NZ_CP066619.1 See Comparison
NZ_CP066679.1 See Comparison
NZ_CP066612.1 See Comparison
NZ_CP066449.1 See Comparison
NZ_CP066441.1 See Comparison
NZ_CP066432.1 See Comparison
NZ_CP066634.1 See Comparison
NZ_LR135285.1 See Comparison
CP063592.1 See Comparison
NZ_LR135453.1 See Comparison
NZ_CP066590.1 See Comparison
NZ_CP066627.1 See Comparison
NZ_CP066619.1 See Comparison
NZ_CP066679.1 See Comparison
NZ_CP066612.1 See Comparison
NZ_CP066449.1 See Comparison
NZ_CP066441.1 See Comparison
NZ_CP066432.1 See Comparison
NZ_CP066634.1 See Comparison
CP063592.1 See Comparison
NZ_LR135285.1 See Comparison
NZ_LR135453.1 See Comparison
NZ_CP066590.1 See Comparison
NZ_CP066627.1 See Comparison
NZ_CP066619.1 See Comparison
NZ_CP066679.1 See Comparison
NZ_CP066612.1 See Comparison
NZ_CP066449.1 See Comparison
NZ_CP066441.1 See Comparison
NZ_CP066432.1 See Comparison
CP063592.1 See Comparison
CP063592.1 See Comparison
NZ_LR135285.1 See Comparison
NZ_LR135453.1 See Comparison
NZ_CP066634.1 See Comparison
NZ_CP066590.1 See Comparison
NZ_CP066627.1 See Comparison
NZ_CP066619.1 See Comparison
NZ_CP066679.1 See Comparison
NZ_CP066612.1 See Comparison
NZ_CP066449.1 See Comparison
NZ_CP066441.1 See Comparison
NZ_CP066432.1 See Comparison
CP063592.1 See Comparison
NZ_LR135285.1 See Comparison
NZ_LR135453.1 See Comparison
NZ_CP066634.1 See Comparison
NZ_CP066590.1 See Comparison
NZ_CP066627.1 See Comparison
NZ_CP066619.1 See Comparison
NZ_CP066679.1 See Comparison
NZ_CP066612.1 See Comparison
NZ_CP066449.1 See Comparison
NZ_CP066441.1 See Comparison
NZ_CP066432.1 See Comparison
CP063561.1 See Comparison
NZ_LR135285.1 See Comparison
NZ_LR135453.1 See Comparison
NZ_CP066590.1 See Comparison
NZ_CP066627.1 See Comparison
NZ_CP066619.1 See Comparison
NZ_CP066634.1 See Comparison
NZ_CP066432.1 See Comparison
NZ_CP066679.1 See Comparison
NZ_CP066612.1 See Comparison
NZ_CP066449.1 See Comparison
NZ_CP066441.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore