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v. 2024_05_31_v2
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Typing
Plasmid CP011625.1
Sequence
Nucleotide Information
Accession
CP011625.1
Description
Klebsiella oxytoca strain CAV1374 plasmid pCAV1374-1919, complete sequence
Source
insd
Topology
circular
Length
1919 bp
GC Content
0.51 %
Created at NCBI
June 9, 2015
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Klebsiella oxytoca (571)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Klebsiella (570)
Species
Klebsiella_oxytoca (571)
Strain
Biosample
Curated Collection Information
Accession
3733738
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
38.14N;78.45W
Original Query Type
coordinates
Coordinates (Lat/Lon)
38.14/-78.45
Address
Aviation Drive, Deerwood, Albemarle County, Virginia, 22936, United States
ECOSYSTEM
Original Query
Homo sapiens,Perirectal
Classification
gastrointestinal_system,host_associated,rectal
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
CP011635.1
CP011634.1
CP011633.1
CP011632.1
CP011631.1
CP011630.1
CP011629.1
CP011628.1
CP011627.1
CP011626.1
Similar Plasmids
based on Mash distance
NZ_CP081014.1
See Comparison
NZ_CP011585.1
See Comparison
NZ_CP149504.1
See Comparison
NZ_CP055516.1
See Comparison
NZ_CP066148.1
See Comparison
NZ_CP011585.1
See Comparison
LR890747.1
See Comparison
LR890734.1
See Comparison
LR890594.1
See Comparison
NZ_CP081014.1
See Comparison
NZ_CP117234.1
See Comparison
NZ_CP101929.1
See Comparison
NZ_CP149504.1
See Comparison
NZ_CP055516.1
See Comparison
LR890747.1
See Comparison
NZ_CP066148.1
See Comparison
LR890734.1
See Comparison
LR890594.1
See Comparison
NZ_CP101929.1
See Comparison
NZ_CP117234.1
See Comparison
NZ_CP081014.1
See Comparison
NZ_CP117234.1
See Comparison
NZ_CP011585.1
See Comparison
NZ_CP149504.1
See Comparison
NZ_CP055516.1
See Comparison
NZ_CP066148.1
See Comparison
LR890747.1
See Comparison
LR890734.1
See Comparison
LR890594.1
See Comparison
LR890747.1
See Comparison
NZ_CP101929.1
See Comparison
NZ_CP081014.1
See Comparison
NZ_CP011585.1
See Comparison
NZ_CP149504.1
See Comparison
NZ_CP055516.1
See Comparison
NZ_CP066148.1
See Comparison
LR890734.1
See Comparison
LR890594.1
See Comparison
NZ_CP101929.1
See Comparison
NZ_CP117234.1
See Comparison
NZ_CP081014.1
See Comparison
LR890747.1
See Comparison
NZ_CP011585.1
See Comparison
CP011625.1
See Comparison
NZ_CP055516.1
See Comparison
NZ_CP066148.1
See Comparison
NZ_CP149504.1
See Comparison
LR890734.1
See Comparison
LR890594.1
See Comparison
NZ_CP117234.1
See Comparison
NZ_CP055516.1
See Comparison
NZ_CP101929.1
See Comparison
NZ_CP081014.1
See Comparison
NZ_CP011585.1
See Comparison
NZ_CP149504.1
See Comparison
NZ_CP066148.1
See Comparison
LR890747.1
See Comparison
LR890734.1
See Comparison
LR890594.1
See Comparison
NZ_CP117234.1
See Comparison
NZ_CP101929.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
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NUCCORE ACC
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore