We are currently working on a feature update for PLSDB and are looking for feedback from the community!
If you have suggestions for new features please tell us on GitHub.

PLSDB - A plasmid database

This resource containes bacterial plasmids retrieved from the NCBI nucleotide database. An overview of the collected plasmids can be used to filter the sequences by various parameters such as length, topology, and taxonomic information. Furthermore, nucleotide sequences can be searched in the database by either using Mash for longer sequences (e.g. contigs or long reads), or by using BLASTn for shorter sequences, e.g. genes.
For more information, please read our publication and visit our FAQ page.

Current status 27939 records

How to cite: Valentina Galata, Tobias Fehlmann, Christina Backes, Andreas Keller; PLSDB: a resource of complete bacterial plasmids, Nucleic Acids Res., 2018 Oct 31, doi: 10.1093/nar/gky1050

Tested with 68.0.3440.84, 61.0.1, 11.1.2
What is new?
  • New option for mash screen: "Winner-takes-all strategy"
  • New option for mash dist: Process sequences individually