This resource containes bacterial plasmids retrieved from the NCBI nucleotide database. An overview of the collected plasmids can be used to filter the sequences by various parameters such as length, topology, and taxonomic information. Furthermore, nucleotide sequences can be searched in the database by either using Mash for longer sequences (e.g. contigs or long reads), or by using BLASTn for shorter sequences, e.g. genes.
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Current status 59895 records
How to cite: Georges P Schmartz, Anna Hartung, Pascal Hirsch, Fabian Kern, Tobias Fehlmann, Rolf Müller, Andreas Keller; PLSDB: advancing a comprehensive database of bacterial plasmids, Nucleic Acids Res., 2021 Nov 25, doi: 10.1093/nar/gkab1111
Valentina Galata, Tobias Fehlmann, Christina Backes, Andreas Keller; PLSDB: a resource of complete bacterial plasmids, Nucleic Acids Res., 2018 Oct 31, doi: 10.1093/nar/gky1050