Plasmid OX030696.1

Sequence

Nucleotide Information

Accession OX030696.1
Description Enterobacter cloacae isolate 78 genome assembly, plasmid: P1
Source insd
Topology circular
Length 270215 bp
GC Content 0.46 %
Created at NCBI June 2, 2022



Biosample

Curated Collection Information
Accession 22316851

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain
Original Query Type name
Coordinates (Lat/Lon) 39.33/-4.84
Address Spain

ECOSYSTEM
Original Query Homo sapiens,Hospital Universitario Son de Espases (Palma de Mallorca)
Classification anthropogenic,hospital,host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

OX030696.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplussul1copy
amrfinderplussul1copy
amrfinderplusblaCTX-M-9copy
amrfinderplusarr-3copy
amrfinderplusaadA1copy
amrfinderplusaac(6')-Ib4copy
amrfinderplusaac(6')-Ib3copy
amrfinderplusaac(6')-Ib-cr5copy
amrfinderplusdfrB1copy
rgiBrucella suis mprFcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 330 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_005211_00005MPF_F27583543plus1001002.33e-172533
mate-pair-formationNC_009838_00006MPF_F35464814plus99.5271000800
mate-pair-formationNC_005211_00012MPF_T895511633plus10010001873
mate-pair-formationNC_021845_00017MPF_F3062232130plus99.6021000997
mate-pair-formationNC_005211_00030MPF_F3227233330plus1001000737
mate-pair-formationNC_005211_00200MPF_F185340186752minus1001000933
mate-pair-formationNC_005211_00207MPF_F194829196910plus10010001423
oriTNC_017500MOBH187789188379plus10010001092
repliconBX664015IncHI2A211840plus10010001164
replicon000340__KU353730rep_cluster_10885695857920plus98.54610001701
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 11 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2