Plasmid OW969844.1
Sequence
Nucleotide Information
| Accession | OW969844.1 |
|---|---|
| Description | Klebsiella pneumoniae isolate 307 genome assembly, plasmid: P5 |
| Source | insd |
| Topology | circular |
| Length | 3670 bp |
| GC Content | 0.56 % |
| Created at NCBI | May 20, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 22316973 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Spain |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 39.33/-4.84 |
| Address | Spain |
ECOSYSTEM
| Original Query | Homo sapiens,Hospital de Guadalajara (Guadalajara) |
|---|---|
| Classification | anthropogenic,hospital,host_associated,location |
| Host-associated Taxon |
|
DISEASE
| Original Query | diseased |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
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B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | Mobilization protein MbeC | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| MOB-typer | rep_cluster_2358 | copy | ||
| MOB-typer | MOB_unknown | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | MOBP | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 7 of 7 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | CP016722 | MOB_unknown | 1245 | 1424 | minus | 85.946 | 83 | 3.5099999999999995e-46 | 191 |
| replicon | CP000974_00005 | rep_cluster_2358 | 1633 | 2142 | plus | 86.528 | 99 | 1.7000000000000002e-157 | 562 |
| relaxase | CP011605_00002 | MOBP | 3 | 827 | minus | 91.636 | 99 | 4.86e-162 | 497 |
| relaxase | NC_016979_00005 | MOBP | 2992 | 3669 | minus | 97.788 | 99 | 7.34e-138 | 433 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |