Plasmid OW969835.1

Sequence

Nucleotide Information

Accession OW969835.1
Description Klebsiella pneumoniae isolate 15 genome assembly, plasmid: P1
Source insd
Topology circular
Length 210940 bp
GC Content 0.53 %
Created at NCBI May 20, 2022



Assembly

Genome Data Information

Accession GCA_905337955.2
Assembly Coverage 278


Biosample

Curated Collection Information
Accession 22317001

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain
Original Query Type name
Coordinates (Lat/Lon) 39.33/-4.84
Address Spain

ECOSYSTEM
Original Query Homo sapiens,Complejo Hospitalario Universitario de A Coruna (A Coruna)
Classification anthropogenic,hospital,host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderpluspcoRcopy
amrfinderpluspcoScopy
amrfinderplusarsAcopy
amrfinderplusmerEcopy
amrfinderplusmerTcopy
amrfinderplusarsBcopy
amrfinderplusarsCcopy
amrfinderplusarsRcopy
amrfinderplushsp20copy
amrfinderplusclpKcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 236 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_021502_00150MPF_T155049157358minus99.6110001455
mate-pair-formationNC_014312_00141MPF_F159977162796minus10010001882
mate-pair-formationNC_019165_00034MPF_F162799164154minus95.796990803
mate-pair-formationNC_021654_00016MPF_F167048169009minus98.3189801234
mate-pair-formationNC_019389_00080MPF_F169062169697minus97.6421001.84e-136428
mate-pair-formationNC_022609_00081MPF_F169713170699minus91.8181000614
mate-pair-formationNC_014312_00128MPF_F171135171767minus1001001.31e-126400
mate-pair-formationNC_021502_00131MPF_T172159174795minus97.04210001762
mate-pair-formationNC_019389_00068MPF_F176969177484minus93.605899.45e-103330
mate-pair-formationNC_023332_00154MPF_F177625179046minus99.3671000790
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 17 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2