Plasmid OW969807.1

Sequence

Nucleotide Information

Accession OW969807.1
Description Klebsiella pneumoniae isolate 101 genome assembly, plasmid: P2
Source insd
Topology circular
Length 91304 bp
GC Content 0.53 %
Created at NCBI May 20, 2022



Assembly

Genome Data Information

Accession GCA_905335635.2
Assembly Coverage 312


Biosample

Curated Collection Information

Accession 22316978

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain
Original Query Type name
Coordinates (Lat/Lon) 39.33/-4.84
Address Spain

ECOSYSTEM
Original Query Homo sapiens,Hospital Fundacion de Alcorcon (Madrid)
Classification anthropogenic,hospital,host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
  • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization


Plasmids from same Biosample




Plasmid Visualization


SourceElement Name Display Sequence Favorite
PGAGReplication initiation proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGAutoinducer 2-binding protein LsrBcopy
PGAGSurface composition regulatorcopy
PGAGhypothetical proteincopy
PGAGModulating protein YmoAcopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 121 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_014312_00116MPF_F5317253474plus1001004.22e-61207
mate-pair-formationNC_014312_00118MPF_F5405054787plus99.5931003.77e-159495
mate-pair-formationNC_023332_00154MPF_F5479056211plus99.1561000785
mate-pair-formationNC_021231_00085MPF_F5682657392plus93.6511001.98e-87286
mate-pair-formationNC_021502_00131MPF_T6001662652plus97.72510001776
mate-pair-formationNC_014312_00128MPF_F6304463661plus98.544981.88e-120382
mate-pair-formationNC_022609_00081MPF_F6368164670plus99.6971000685
mate-pair-formationNC_019389_00080MPF_F6468665321plus98.1131009.4e-137429
mate-pair-formationNC_021654_00016MPF_F6537467335plus94.0379801187
mate-pair-formationNC_019165_00034MPF_F7069072045plus91.593990775
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 16 entries