Plasmid OW969774.1

Sequence

Nucleotide Information

Accession OW969774.1
Description Klebsiella pneumoniae isolate 147 genome assembly, plasmid: P2
Source insd
Topology circular
Length 117630 bp
GC Content 0.52 %
Created at NCBI May 20, 2022



Assembly

Genome Data Information

Accession GCA_905335805.2
Assembly Coverage 239


Biosample

Curated Collection Information
Accession 22316999

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain
Original Query Type name
Coordinates (Lat/Lon) 39.33/-4.84
Address Spain

ECOSYSTEM
Original Query Homo sapiens,Complejo Hospitalario Universitario de A Coruna (A Coruna)
Classification anthropogenic,hospital,host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

OW969774.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusdfrA12copy
PGAGReplication protein RepAcopy
PGAGChromosome-partitioning ATPase Sojcopy
PGAGTyrosine recombinase XerDcopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 138 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000759__NC_013950_00034rep_cluster_141819894plus99.88610001613
repliconCP035723_00002rep_cluster_23502425424812plus94.8311000870
replicon000118__KJ958926_00047IncFII6591966620minus10010001297
oriTKT950740MOBF2337723633minus96.124895.65e-115420
relaxaseNC_021198_00256MOBP98872100797minus10010001294
mate-pair-formationNC_021198_00230MPF_I7145172266plus1001000568
mate-pair-formationNC_021198_00234MPF_I7707277422plus1001005.190000000000004e-72239
mate-pair-formationNC_021198_00235MPF_I7746178162plus1001006.92e-156485
mate-pair-formationNC_021198_00236MPF_I7817679276plus1001000655
mate-pair-formationNC_021198_00238MPF_I8062981345plus1001004.38e-145454
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 16 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2