Plasmid OW968454.1

Sequence

Nucleotide Information

Accession OW968454.1
Description Klebsiella pneumoniae isolate 1961 genome assembly, plasmid: P1
Source insd
Topology circular
Length 307418 bp
GC Content 0.47 %
Created at NCBI May 20, 2022



Assembly

Genome Data Information

Accession GCA_905331235.2
Assembly Coverage 293


Biosample

Curated Collection Information
Accession 22316897

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain
Original Query Type name
Coordinates (Lat/Lon) 39.33/-4.84
Address Spain

ECOSYSTEM
Original Query Homo sapiens,Complejo Hospitalario de Pontevedra (Pontevedra)
Classification anthropogenic,hospital,host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgiAAC(3)-Ib/AAC(6')-Ib3 bifunctional proteincopy
amrfinderplusncrBcopy
amrfinderplusncrYcopy
amrfinderplusncrCcopy
amrfinderplusncrAcopy
amrfinderplusterEcopy
amrfinderplusterDcopy
amrfinderplusterCcopy
amrfinderplusterBcopy
PGAGRepFIB replication protein Acopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 329 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_018107_00101MPF_F7295874397minus96.251000923
mate-pair-formationNC_016980_00240MPF_F8259084713plus97.03410001441
mate-pair-formationNC_023911_00309MPF_F255903256760plus91.9581003.35e-171531
mate-pair-formationNC_018107_00235MPF_F256765257931plus93.3161000709
mate-pair-formationNC_016980_00099MPF_T261892264606plus99.66910001841
mate-pair-formationNC_016980_00109MPF_F274083275441plus99.7791000936
mate-pair-formationNC_016980_00110MPF_F275441276475plus1001000718
relaxaseNC_016980_00239MOBH7965282597plus99.28710001931
repliconCP024497_00001IncFIB181678182740minus93.4219801576
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 9 of 9 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2